Re: Problem building 2-domain protein

[Eric Feyfant <eric@flute>]

Dear Pieter;

If I read correctly the last 3 sentences of the  log file  you obtained:

> malign3d_> Initial framework positions:     
> 9
> fit2xyz_E> number of equivalent positions < 3:    
> 0
> recover__>  MODELLER_STATUS  >=  CONTROL:  
> 1  1
 It seems that you tryed to used malign3d with 9 sequences but you
told us that you have only 8 structures. That is probably the problem,
because Malign3D works only with structures. Here you included the sequence
to model, that crashed Modeller.
Please Check you top file again.

Eric

-- 
Eric FEYFANT 
Laboratory of Molecular Biophysics
(SALI Lab)
The Rockefeller Univ, Box 270 
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Phone: (212) 327 7206 | Fax: (212) 327 7540
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www-homepage:http://salilab.org/~eric/