I have found that the problem mentioned by Tom Lee about modelling
loops only occurs for
the MSI version of MODELLER and not the academic version. I get around
the problem by
putting the following in the TOP file.:
INCLUDE
DEFINE_STRING VARIABLES = LOOP_CSRFILE LOOP_INI_MODEL
SET SEQUENCE
= 'aaa'
SET MODEL
= 'aaa.pdb' # initial model of the target
:
:
The define_string... line is the only line to be added.
I can't remember how I trouble-shot the problem as I fixed it a month
ago.
I believe this will fix Dr Lee's problem.
Regards
Rob
-- ----------------------------------------------------- Robert Jorissen Ludwig Institute for Cancer Research P.O. BOX 2008, Royal Melbourne Hospital Parkville, Victoria 3050, Australia phone: ++61-3-9341-3155 fax: ++61-3-9341-1938 e-mail: -----------------------------------------------------