Hi,
In the alignment the sequences of each monomer must be separated by a
chain break character "/" (slash). That should solve the problem.
Best Wishes,
Roberto
--
Roberto Sanchez | phone : (212) 327 7206
The Rockefeller University | fax : (212) 327 7540
1230 York Avenue, Box 38 | e-mail:
New York, NY 10021-6399 | http://salilab.org
"Jeffrey P. Jones" wrote:
>
> I am trying to model a heterotrimeric protein with Modeller. How do I
> designate the different chains? My template molecule contains three chains,
> as does the model I'm trying to make. When I use Modeller I get a single
> chain which distorts my overall tertiary structure. Do I have to model each
> chain individually or am I missing something?
>
> Jeff
>
> Jeffrey P. Jones, Associate Professor of Chemistry
> Room 477 Fulmer Hall, Washington State University
> Pullman WA 99164-4630,
> http://cyp.chem.wsu.edu/~jpj/jones_group.html
> (509) 335-5983, Fax (509) 335-8867