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Re: Modelling Hetero trimers



Hi,

In the alignment the sequences of each monomer must be separated by a
chain break character "/" (slash). That should solve the problem.

Best Wishes,

Roberto

-- 
Roberto Sanchez              |  phone : (212) 327 7206
The Rockefeller University   |  fax   : (212) 327 7540
1230 York Avenue, Box 38     |  e-mail: 
New York, NY 10021-6399      |  http://salilab.org


"Jeffrey P. Jones" wrote:
> 
> I am trying to model a heterotrimeric protein with Modeller.  How do I
> designate the different chains?  My template molecule contains three chains,
> as does the model I'm trying to make.  When I use Modeller I get a single
> chain which distorts my overall tertiary structure.  Do I have to model each
> chain individually or am I missing something?
> 
> Jeff
> 
> Jeffrey P. Jones, Associate Professor of Chemistry
> Room 477 Fulmer Hall, Washington State University
> Pullman WA 99164-4630, 
> http://cyp.chem.wsu.edu/~jpj/jones_group.html
> (509) 335-5983, Fax (509) 335-8867