Hi Aldo,
Probably your templates are not very consistent structurally which happens
because they are either very different from each other or a wrong alignment is
created that tries to close such distances which are apart in the structure.
You also should pay attention that the templates used for insertion modeling
overlap at least on residue on either side with the rest of the templates.
Increasing maxspl would mask the distance differences and avoid the error
message, but not solve the inconsistency problem of the templates.
Andras
Aldo Jongejan wrote:
>
> Hi All,
>
> I encountered a problem using 10 template structures to model
> a long loop structure. The alignment is very minimal, so maybe I
> should break it down in smaller parts. Modeller checks the alignment
> and suggest setting the 'MAXSPL' value to a bigger (?) value.
> What is this MAXSPL value and how can I set this?
>
> I thought it had something to do with the SPLINE's setting, so
> I turned SPLINE_ON_SITE off. This resulted in a
> 'repetition: incomprehensible list input' error. What does this mean?
> And, most important' how can I prevent this from happening ! :-)
>
> thnaks,
>
> aldo jongejan
--
,
Andras Fiser, PhD # phone: (212) 327 7206
The Rockefeller University # fax: (212) 327 7540
Box 270, 1230 York Avenue # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras