FW: BOUNCE : Non-member submission from ["Tsu-Sheng Wang" <>]
To: <>
Subject: FW: BOUNCE : Non-member submission from ["Tsu-Sheng Wang" <>]
From: Modeller Care <>
Date: Wed, 19 Mar 2003 09:44:48 -0500
Forwarded by the list owner.
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From:
Date: Tue, 18 Mar 2003 19:49:28 -0800
To:
Subject: BOUNCE : Non-member submission from
["Tsu-Sheng Wang" <>]
Dears:
I think you can check MMTSB. There is a program which is caculate RMSD.
The web site is http://mmtsb.scripps.edu/doc/rms.pl.html.
Jack
----- Original Message -----
±H¥óªÌ: "Shiyong Liu" <>
œ¬¥óªÌ: "Andrej Sali" <>; "'quentin kaas'"
<>; <>
¶Ç°e€é´Á: 2003œ~3€ë19€é €W€È 01:10
¥Dœ®: source code for RMSD programme
Andrej Sali,ÄúºÃ£¡
I want to caculate RMSD between one protein and many other protein
structures. I hardly found a good RMSD programme by google. Could you help
me give me a RMSD programme?
Shiyong
======= 2003-03-18 07:02:00 ÄúÔÚÀ´‹ÅÖ‹‹´µÀ£º=======
>Possibly so.
>
>Andrej
>
>--
>Andrej Sali, Professor
>Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and
> California Institute for Quantitative Biomedical Research
>Mission Bay Genentech Hall
>600 16th Street, Suite N472D
>University of California, San Francisco
>San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier)
>Tel +1 (415) 514-4227; Fax +1 (415) 514-4231
>Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4239
>Email ; Web http://salilab.org
>
>
>> -----Original Message-----
>> From:
>> [">mailto:] On Behalf Of quentin kaas
>> Sent: Tuesday, March 18, 2003 7:00 AM
>> To:
>> Subject: Re: Array too small. Increase MPAIRS
>>
>>
>> I resolved my MPAIRS problem in using the top_heav.lib
>> topology library
>> instead of the top_allh.lib. As my model is quite big, the
>> hydrogens may be
>> too numerous to be handled by Modeller.
>> Thank you for your help.
>>
>> Quentin Kaas
>>
>> Le Lundi 17 Mars 2003 16:08, Andrej Sali a écrit :
>> > Without seeing the input/output files, it probably indicates a
>> > difficult optimization problem that runs into many overlapping atom
>> > pairs. Can you improve the alignment?
>> >
>> > Andrej
>>
>>
>
>.
= = = = = = = = = = = = = = = = = = = =
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡ÖÂ
Àñ£¡
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡Shiyong Liu
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡2003-03-19
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