Modeller_Usage Mailing List (by date)

Thread Index

How to change a pdb file's chain id without renumbering the residues using Modeller? 2003/01/07
- From: "Kong Lesheng" <lesheng AT bic.nus.edu.sg>
Many templates/targets 2003/01/08
- From: Cvetan Stojkoski <cvetan.stojkoski AT adelaide.edu.au>
Re: Many templates/targets 2003/01/09
- From: Karsten Suhre <Karsten.Suhre AT igs.cnrs-mrs.fr>
Re: Many templates/targets 2003/01/09
- From: Cvetan Stojkoski <cvetan.stojkoski AT adelaide.edu.au>
bond_length_violation/bond_error 2003/01/13
- From: Ralf Schmid <ralf AT bch.ed.ac.uk>
none restraints made 2003/01/16
- From: alarcon AT lncc.br
Array too small. Increase MVSPRM 2003/01/19
- From: Cvetan Stojkoski <cvetan.stojkoski AT adelaide.edu.au>
Problem with align2d 2003/01/20
- From: "Andrew Kiggundu" <andrew.kiggundu AT fabi.up.ac.za>
Re: Array too small. Increase MVSPRM 2003/01/21
- From: Bozidar Yerkovich <bozidar AT salilab.org>
conformation change 2003/01/21
- From: zjnjuct <zjnjuct AT yahoo.com>
Re: conformation change 2003/01/22
- From: "Eric Feyfant" <EFeyfant AT wyeth.com>
Re: Problem with align2d 2003/01/22
- From: Bozidar Yerkovich <bozidar AT salilab.org>
IMPORTANT Announcements!!! 2003/01/27
- From: Bozidar Yerkovich <bozidar AT guitar.rockefeller.edu>
RE: too many helices 2003/02/06
- From: "Andrej Sali" <sali AT salilab.org>
FW: Problems on installation (fwd) 2003/02/11
- From: "Andrej Sali" <sali AT salilab.org>
FW: Problems on installation (fwd) 2003/02/11
- From: "Andrej Sali" <sali AT salilab.org>
Re: FW: Problems on installation (fwd) 2003/02/11
- From: "Raghurama P. Hegde" <rph AT physics.iisc.ernet.in>
homology modelling 2003/02/12
- From: Vidya Harini <vidya AT physics.iisc.ernet.in>
completing incomplete PDBs 2003/02/18
- From: Christoph Nimptsch <christoph.nimptsch AT uni-tuebingen.de>
Re: completing incomplete PDBs 2003/02/20
- From: Karsten Suhre <Karsten.Suhre AT igs.cnrs-mrs.fr>
error when using "model " command 2003/02/21
- From: "Guittet, Muriel" <Guittet AT vegmail.ucdavis.edu>
Simulated annealing 2003/02/21
- From: Modeller Care <modeller-care@ucsf.edu>
no seq_search.dat file at the end 2003/02/21
- From: vimalkumar v <vimalkumar_v AT vsnl.net>
no seq_search.dat file at the end 2003/02/21
- From: vimalkumar v <vimalkumar_v AT vsnl.net>
New to Modeller... 2003/02/25
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
New to mod6v2 (cont...) 2003/02/26
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
heteroatoms & loop_select 2003/02/26
- From: Modeller Care <modeller-care@ucsf.edu>
New to... (cont!!!!) 2003/02/26
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
FW: modeller in CCP4 (fwd) 2003/02/26
- From: "Andrej Sali" <sali AT salilab.org>
FW: Help - syntax problem (fwd) 2003/02/26
- From: "Andrej Sali" <sali AT salilab.org>
FW: Ask for help. (fwd) 2003/02/26
- From: "Andrej Sali" <sali AT salilab.org>
FW: modeller problem (fwd) 2003/02/26
- From: "Andrej Sali" <sali AT salilab.org>
It`s alive!!! 2003/02/26
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
gap creation and extension penalties 2003/02/27
- From: Chris de Graaf <degraaf AT few.vu.nl>
Re: It`s alive!!! 2003/02/27
- From: Tom Duncan <duncant AT upstate.edu>
Re: It`s alive!!! [ MD without template restraints ] 2003/02/27
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
RE: gap creation and extension penalties 2003/02/27
- From: "Andrej Sali" <sali AT salilab.org>
RE: It`s alive!!! 2003/02/27
- From: "Andrej Sali" <sali AT salilab.org>
FW: rationale for assigining the coordinates with a break ( | ) 2003/02/28
- From: Modeller Care <modeller-care@ucsf.edu>
FW: problem with large system 2003/03/03
- From: Modeller Care <modeller-care@ucsf.edu>
PDB format and NMR models 2003/03/03
- From: Simon Holton <simon AT biop.ox.ac.uk>
FW: stacksize limit 2003/03/03
- From: Modeller Care <modeller-care@ucsf.edu>
Re: PDB format and NMR models 2003/03/03
- From: Ralf Schmid <ralf AT bch.ed.ac.uk>
RE: problem with large system 2003/03/03
- From: "Andrej Sali" <sali AT salilab.org>
New to Modeller !! 2003/03/04
- From: "Urmi Doshi" <urdoshi AT wam.umd.edu>
Re: New to Modeller !! 2003/03/04
- From: Bozidar Yerkovich <bozidar AT salilab.org>
Re: New to Modeller !! 2003/03/04
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
Re: New to Modeller !! 2003/03/04
- From: "Peter C. Lai" <sirmoo AT cowbert.2y.net>
Re: New to Modeller !! 2003/03/05
- From: "Urmi Doshi" <urdoshi AT wam.umd.edu>
FW: New to Modeller !! 2003/03/05
- From: "Andrej Sali" <sali AT salilab.org>
Protein+Metal Ion? 2003/03/06
- From: Modeller Care <modeller-care@ucsf.edu>
Re: Protein+Metal Ion? 2003/03/07
- From: Luca Settimo <lsettimo AT abo.fi>
Fluorescent residue 2003/03/07
- From: "John T. Penniston" <penniston.john AT mayo.edu>
FW: Protein+Metal Ion? 2003/03/10
- From: Modeller Care <modeller-care@ucsf.edu>
Modelling to multimer 2003/03/10
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
Modeller error message 2003/03/12
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
Re: Modeller error message 2003/03/12
- From: "Luis Rosales" <ludwig AT biomedicas.unam.mx>
Re: Modeller error message 2003/03/13
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
Specification of chain of output atom files. 2003/03/13
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
Re: Specification of chain of output atom files. 2003/03/13
- From: "Peter C. Lai" <sirmoo AT cowbert.2y.net>
Re: Specification of chain of output atom files. 2003/03/13
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
Re: Specification of chain of output atom files. 2003/03/13
- From: Tom Duncan <duncant AT upstate.edu>
RE: Specification of chain of output atom files. 2003/03/13
- From: "Andrej Sali" <sali AT salilab.org>
RE: Specification of chain of output atom files. 2003/03/13
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
RE: Specification of chain of output atom files. 2003/03/13
- From: "Andrej Sali" <sali AT salilab.org>
RE: Specification of chain of output atom files. 2003/03/14
- From: Richard Friedman <friedman AT cancercenter.columbia.edu>
FW: Array too small. Increase MPAIRS 2003/03/17
- From: Modeller Care <modeller-care@ucsf.edu>
RE: Array too small. Increase MPAIRS 2003/03/17
- From: "Andrej Sali" <sali AT salilab.org>
NMR and Crystallographic models 2003/03/17
- From: Simon Holton <simon AT biop.ox.ac.uk>
Re: Array too small. Increase MPAIRS 2003/03/18
- From: quentin kaas <kaas AT ligm.igh.cnrs.fr>
RE: Array too small. Increase MPAIRS 2003/03/18
- From: "Andrej Sali" <sali AT salilab.org>
source code for RMSD programme 2003/03/18
- From: "Shiyong Liu" <syliu AT mdl.ipc.pku.edu.cn>
Modified Protein residues 2003/03/19
- From: Modeller Care <modeller-care@ucsf.edu>
FW: BOUNCE modeller_usage@listsrv.ucsf.edu: Non-member submission from ["Tsu-Sheng Wang" <tswang AT life.nthu.edu.tw>] 2003/03/19
- From: Modeller Care <modeller-care@ucsf.edu>
Re: Modified Protein residues 2003/03/20
- From: "John T. Penniston" <penniston.john AT mayo.edu>
FW: Modeller6v2 trouble 2003/03/21
- From: Modeller Care <modeller-care@ucsf.edu>
RE: Modeller6v2 trouble 2003/03/21
- From: "Andrej Sali" <sali AT salilab.org>
Re: FW: Modeller6v2 trouble 2003/03/21
- From: Luca Settimo <lsettimo AT abo.fi>
error STDEV < 0: 2003/03/21
- From: "Guittet, Muriel" <Guittet AT vegmail.ucdavis.edu>
RE: error STDEV < 0: 2003/03/21
- From: "Andrej Sali" <sali AT salilab.org>
Re: Re: Modeller6v2 installation problem 2003/03/23
- From: Kong Lesheng <lesheng AT bic.nus.edu.sg>
Re: Re: Modeller6v2 installation problem 2003/03/23
- From: Kong Lesheng <lesheng AT bic.nus.edu.sg>
MAXATM 2003/03/31
- From: "Matteo Masetti" <matteo AT scfarm.unibo.it>
modeller from python 2003/03/31
- From: Ursula Pieper <ursula AT salilab.org>
modeller question 2003/03/31
- From: Modeller Care <modeller-care@ucsf.edu>
heteroatoms_zinc 2003/04/01
- From: Alys.Peisley AT csiro.au
Re: heteroatoms_zinc 2003/04/01
- From: "John T. Penniston" <penniston.john AT mayo.edu>
residue-undefined 2003/04/01
- From: Modeller Care <modeller-care@ucsf.edu>
Running Modeller6v2 Windows 2003/04/07
- From: Anurag Sethi <sethi2 AT scs.uiuc.edu>
Questions about using Modeller 2003/04/07
- From: "Dong Chen" <dongc AT cc.usu.edu>
Re: Questions about using Modeller 2003/04/07
- From: Ralf Schmid <ralf AT bch.ed.ac.uk>
can't find Log file 2003/04/08
- From: "Dong Chen" <dongc AT cc.usu.edu>
Re: can't find Log file 2003/04/08
- From: Mensur Dlakic <mensur AT umich.edu>
RE: can't find Log file 2003/04/08
- From: "Dong Chen" <dongc AT cc.usu.edu>
Odd behavior when reading an alignment referring to a PDB file with a HEATM record when chain ID is '.' 2003/04/08
- From: Modeller Care <modeller-care@ucsf.edu>
what is NICE in mod6v2? 2003/04/08
- From: "Cheri M Turman" <Cheri.M.Turman AT uth.tmc.edu>
Re: what is NICE in mod6v2? 2003/04/09
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
[no subject] 2003/04/09
- From: Gowthaman R <gowtham AT icgeb.res.in>
Question regarding rigid body constrained to the Fe in a heme group 2003/04/10
- From: Modeller Care <modeller-care@ucsf.edu>
B-factor 2003/04/10
- From: christopher wells <wellsca AT musc.edu>
FW: problem with modeller6v2,(.pdb attached) 2003/04/11
- From: Modeller Care <modeller-care@ucsf.edu>
Problen to run modeller 2003/04/16
- From: JP <juan.palacio AT biotec.utfsm.cl>
Problen to run modeller v2 2003/04/16
- From: JP <juan.palacio AT biotec.utfsm.cl>
Problem to run modeller (problem v3) 2003/04/17
- From: JP <juan.palacio AT biotec.utfsm.cl>
PSC Summer Workshop: Modeling from Protein Sequence to Structure 2003/04/21
- From: Troy Wymore <wymore AT psc.edu>
problem with check_alignment 2003/04/21
- From: JP <juan.palacio AT biotec.utfsm.cl>
RE: problem with check_alignment 2003/04/21
- From: Roberto Sanchez <roberto.sanchez AT mssm.edu>
Superposer two protein structure 2003/04/23
- From: Shiyong Liu <syliu AT mdl.ipc.pku.edu.cn>
problem with files .top 2003/04/23
- From: JP <juan.palacio AT biotec.utfsm.cl>
RE: Superposer two protein structure 2003/04/23
- From: "Eashwar Narayanan" <eashwar AT salilab.org>
optimize with a membrane protein 2003/04/24
- From: jxs818 AT bham.ac.uk
Re: problem with files .top 2003/04/24
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
problem with files .top solve 2003/04/24
- From: JP <juan.palacio AT biotec.utfsm.cl>
Restraints 2003/04/29
- From: Anurag Sethi <sethi2 AT scs.uiuc.edu>
NOTE FOR BASH USERS 2003/05/01
- From: Romain.Studer AT etu.unil.ch
malign3D 2003/05/07
- From: Modeller Care <modeller-care@ucsf.edu>
modeling question 2003/05/12
- From: Douglas Kojetin <djkojeti AT unity.ncsu.edu>
Re: modeling question 2003/05/12
- From: Modeller Care <modeller-care@ucsf.edu>
bad pdb file error 2003/05/12
- From: Mike Kurtz <kurtz.64 AT osu.edu>
How model two o more alignment automatic 2003/05/15
- From: JP <juan.palacio AT biotec.utfsm.cl>
D aminoacids 2003/05/20
- From: "Angelo Favia" <favia AT farmchim.uniba.it>
info log file 2003/05/20
- From: "Angelo Favia" <favia AT farmchim.uniba.it>
info log file 2003/05/20
- From: "Angelo Favia" <favia AT farmchim.uniba.it>
0.25 backbone RMSD/2.9 heavy atoms 2003/05/20
- From: Jianhui Wu <wujih AT BRI.NRC.CA>
RE: error STDEV < 0: 2003/05/20
- From: "Andrej Sali" <sali AT salilab.org>
Re: 0.25 backbone RMSD/2.9 heavy atoms 2003/05/20
- From: Jianhui Wu <wujih AT BRI.NRC.CA>
RE: error STDEV < 0: 2003/05/21
- From: Liu Shiyong <syliu AT mdl.ipc.pku.edu.cn>
RE: error STDEV < 0: 2003/05/21
- From: "Andrej Sali" <sali AT salilab.org>
Re: RMSDs including experimental error 2003/05/21
- From: Modeller Care <modeller-care@ucsf.edu>
FW: MALIGN-3D: How to run it. 2003/05/22
- From: Modeller Care <modeller-care@ucsf.edu>
Problem with _ and - characters present in filenames 2003/05/27
- From: Owen <owl AT bms.umist.ac.uk>
Re: Problem with _ and - characters present in filenames 2003/05/27
- From: Owen <owl AT bms.umist.ac.uk>
Command for distance restraint 2003/05/28
- From: Modeller Care <modeller-care@ucsf.edu>
FW: model a protein 2003/06/02
- From: Modeller Care <modeller-care@ucsf.edu>
Re: FW: model a protein 2003/06/02
- From: "Eric Feyfant" <EFeyfant AT wyeth.com>
Re: FW: model a protein 2003/06/02
- From: "Peter C. Lai" <sirmoo AT cowbert.2y.net>
MULTIPLE/SINGLE templates for modelling. 2003/06/08
- From: "Mr.Sridhar" <sridhar AT www.cdfd.org.in>
Re: MULTIPLE/SINGLE templates for modelling. 2003/06/09
- From: Procter James <procter AT basel.zbh.uni-hamburg.de>
Re: MULTIPLE/SINGLE templates for modelling. 2003/06/10
- From: Karsten Suhre <Karsten.Suhre AT igs.cnrs-mrs.fr>
RE: problem in installing modeller 2003/06/10
- From: "Andrej Sali" <sali AT salilab.org>
RE: problem in installing modeller 2003/06/10
- From: "Raghurama P. Hegde" <rph AT physics.iisc.ernet.in>
Re: problem in installing modeller 2003/06/11
- From: Robert Campbell <rlc1 AT post.queensu.ca>
dimer model 2003/06/12
- From: Difei Wang <dwang AT nd.edu>
Re: dimer model 2003/06/12
- From: "Margot Ernst" <margot.ernst AT univie.ac.at>
Re: dimer model 2003/06/12
- From: Stephane Vandevuer <svdevuer AT ulb.ac.be>
Modeller input alignment file 2003/06/15
- From: "christos Kouriniadis" <kouriniadischristos AT hotmail.com>
Re: Modeller input alignment file 2003/06/16
- From: Stephane Vandevuer <svdevuer AT ulb.ac.be>
Re: Modeller input alignment file 2003/06/16
- From: Modeller Care <modeller-care@ucsf.edu>
How to include the modified residues in the alignment (.pir file) 2003/06/16
- From: mxue AT rdg.boehringer-ingelheim.com
FW: top file problem 2003/06/28
- From: Modeller Care <modeller-care@ucsf.edu>
log file 2003/06/29
- From: "truename" <yb_108 AT yeah.net>
B factor column? 2003/06/30
- From: Margot Ernst <margot.ernst AT univie.ac.at>
Incorrect topology library used error 2003/06/30
- From: Seth J Goldenberg <sgolden AT u.washington.edu>
Incorrect PDB file 2003/07/01
- From: "truename" <yb_108 AT yeah.net>
Re: Incorrect PDB file 2003/07/01
- From: sasson iris <sassonir AT cs.bgu.ac.il>
Re: Incorrect PDB file 2003/07/01
- From: xiang li <xiangli AT gila.bioengr.uic.edu>
Error on reading ligands 2003/07/03
- From: Modeller Care <modeller-care@ucsf.edu>
My 1DBG_A.pdb 2003/07/03
- From: "truename" <yb_108 AT yeah.net>
Re: make a model from two X-ray structures which has no overlap 2003/07/03
- From: Modeller Care <modeller-care@ucsf.edu>
Using a model file as one of the templates 2003/07/06
- From: sasson iris <sassonir AT cs.bgu.ac.il>
FW: difference between FASTA and PDB 2003/07/07
- From: Modeller Care <modeller-care@ucsf.edu>
B-factor column 2003/07/07
- From: Margot Ernst <margot.ernst AT univie.ac.at>
Re: B-factor column 2003/07/07
- From: Dinesh Soares <dinesh AT ambler.icmb.ed.ac.uk>
AW: difference between FASTA and PDB 2003/07/07
- From: "Thorsten Schweikardt" <thorsten AT uni-mainz.de>
Re: B-factor column 2003/07/10
- From: Margot Ernst <margot.ernst AT univie.ac.at>
Using a model file as one of the templates (fwd) 2003/07/10
- From: sasson iris <sassonir AT cs.bgu.ac.il>
complex 2003/07/10
- From: Thijs Beuming <thijs.beuming AT mssm.edu>
RE: complex 2003/07/10
- From: "Eashwar Narayanan" <eashwar AT salilab.org>
Re: Using a model file as one of the templates (fwd) 2003/07/11
- From: sasson iris <sassonir AT cs.bgu.ac.il>
FW: help 2003/07/17
- From: Modeller Care <modeller-care@ucsf.edu>
Re: help running run_tops1 2003/07/17
- From: Modeller Care <modeller-care@ucsf.edu>
FW: modeller 2003/07/17
- From: Modeller Care <modeller-care@ucsf.edu>
mod6v2 still doesn't work on FreeBSD 2003/07/17
- From: "Peter C. Lai" <sirmoo AT cowbert.2y.net>
Creating an oligonucleotide sequence. 2003/07/18
- From: Andy Torelli <andrew_torelli AT URMC.Rochester.edu>
Do residue topology entries for nucleotides exist? 2003/07/23
- From: Andy Torelli <andrew_torelli AT URMC.Rochester.edu>
Re: Do residue topology entries for nucleotides exist? 2003/07/24
- From: Mensur Dlakic <mensur AT umich.edu>
upper residue number modeling limit? 2003/07/24
- From: "Timothy Minh" <timminh AT uclink.berkeley.edu>
Re: upper residue number modeling limit? 2003/07/25
- From: "John T. Penniston" <penniston.john AT mayo.edu>
Re: upper residue number modeling limit? 2003/07/25
- From: "Eliah Aronoff-Spencer" <earonoff AT aecom.yu.edu>
making rtf/.lib files for new amino acids 2003/07/25
- From: "Eliah Aronoff-Spencer" <earonoff AT aecom.yu.edu>
unusual AAs 2003/07/25
- From: "John T. Penniston" <penniston.john AT mayo.edu>
Distance restraints cause segmentation faults 2003/07/25
- From: Modeller Care <modeller-care@ucsf.edu>
building a model with water molecules. 2003/07/27
- From: Moshe Amitay <moshe AT noamy.ch.biu.ac.il>
Attempting to run the first tutorial 2003/07/29
- From: Andrew Latos <lato4864 AT uidaho.edu>
FW: modeling problem 2003/07/29
- From: Modeller Care <modeller-care@ucsf.edu>
Re: Attempting to run the first tutorial 2003/07/30
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
Error in launching Modeller 2003/07/30
- From: "Antonio Arroyo Luque" <aarrluq AT dex.upo.es>
problem with new residue 2003/07/31
- From: "Eliah Aronoff-Spencer" <earonoff AT aecom.yu.edu>
Tutorial from CPIB 2003/08/05
- From: Andrew Latos <lato4864 AT uidaho.edu>
Modeller input file 2003/08/09
- From: "christos Kouriniadis" <kouriniadischristos AT hotmail.com>
mutate_model 2003/08/14
- From: Asmat Salim <aahh AT cyberaccess.com.pk>
introduction of a Ca binding site 2003/08/15
- From: Karsten Suhre <Karsten.Suhre AT igs.cnrs-mrs.fr>
e-mail 2003/08/15
- From: "truename" <yb_108 AT yeah.net>
Re: mutate_model 2003/08/15
- From: "Eliah Aronoff-Spencer" <earonoff AT aecom.yu.edu>
CPIB Tutorial 1 2003/08/16
- From: Andrew Latos <lato4864 AT uidaho.edu>
comparing align. (1 attachment) 2003/08/18
- From: Michael Grabe <mgrabe AT itsa.ucsf.edu>
Modelling with metals and hetero 2003/08/19
- From: Modeller Care <modeller-care@ucsf.edu>
RE: Modelling with metals and hetero 2003/08/19
- From: "Eashwar Narayanan" <eashwar AT salilab.org>
Advice on heteroatoms, metals and water 2003/08/19
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
Re: Advice on heteroatoms, metals and water 2003/08/20
- From: Karsten Suhre <Karsten.Suhre AT igs.cnrs-mrs.fr>
Re: Advice on heteroatoms, metals and water 2003/08/20
- From: Jim Procter <procter AT zbh.uni-hamburg.de>
multidomain protein modeling 2003/08/20
- From: Modeller Care <modeller-care@ucsf.edu>
FW: two attached small, pdb files 2003/08/25
- From: Modeller Care <modeller-care@ucsf.edu>
Re: FW: two attached small, pdb files 2003/08/26
- From: J B Procter <procter AT zbh.uni-hamburg.de>
Multidomain protein alignment 2003/08/26
- From: "Morgane Agez" <morgane AT iqs.es>
mutate 2003/08/26
- From: Hafsa/Asmat <aahh AT cyberaccess.com.pk>
loop modeling 2003/08/26
- From: Modeller Care <modeller-care@ucsf.edu>
loop modeling 2003/08/26
- From: Moshe Amitay <moshe AT noamy.ch.biu.ac.il>
Re: Multidomain protein alignment 2003/08/27
- From: J B Procter <procter AT zbh.uni-hamburg.de>
Re: loop modeling 2003/08/27
- From: Andras Fiser <afiser AT aecom.yu.edu>
More weight for user distance restraints 2003/08/28
- From: Modeller Care <modeller-care@ucsf.edu>
FW: building a new residue 2003/08/28
- From: Modeller Care <modeller-care@ucsf.edu>
model_refinement 2003/09/02
- From: Modeller Care <modeller-care@ucsf.edu>
modeling membrane protein loops 2003/09/02
- From: Modeller Care <modeller-care@ucsf.edu>
Fwd: Re: model_refinement 2003/09/03
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: can't write the model structure 2003/09/05
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Re: model_refinement 2003/09/08
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: how to ERROR: MODEL atom not classified: TYR:OT1 TYR 2003/09/10
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: Re: how to ERROR: MODEL atom not classified: TYR:OT1 TYR 2003/09/10
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: Re: model_refinement 2003/09/11
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Re: Fwd: Re: model_refinement 2003/09/15
- From: Oliver Hucke <ohucke AT u.washington.edu>
solvent accessibility & WRITE_DATA 2003/09/18
- From: Oliver Hucke <ohucke AT u.washington.edu>
Array too small 2003/09/23
- From: Pedro Antonio Reche <reche AT research.dfci.harvard.edu>
Fwd: modelling problem 2003/09/24
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: Re: model_refinement 2003/09/24
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: what is the problem? 2003/09/26
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Fwd: Help for "Sequence difference between alignment and pdb" 2003/09/26
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Re: Fwd: what is the problem? 2003/09/26
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Re: Fwd: Help for "Sequence difference between alignment and pdb" 2003/09/26
- From: Xiao-Ping Zhang <xpzhang AT ucdavis.edu>
Re: Fwd: Help for "Sequence difference between alignment and pdb" 2003/09/27
- From: Andras Fiser <afiser AT aecom.yu.edu>
Alignment 2003/10/08
- From: Gianluca Ottolina <gianluca.ottolina AT icrm.cnr.it>
top files for ligands 2003/10/08
- From: Oliver Hucke <ohucke AT u.washington.edu>
[modeller_usage] Recent changes to the modeller_usage mailing list 2003/10/08
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] IC entries in topology file 2003/10/08
- From: Oliver Hucke <ohucke AT u.washington.edu>
[modeller_usage] HSE residue type problems 2003/10/13
- From: Oliver Hucke <ohucke AT u.washington.edu>
[modeller_usage] good book on modeller usage 2003/10/13
- From: rathan kar <friendsrathan AT yahoo.co.in>
[modeller_usage] Problem in SEQUENCE_SEARCH 2003/10/14
- From: "Jorge Hernanez Fernandez" <jorgehf AT cbi.cnptia.embrapa.br>
Re: [modeller_usage] Problem in SEQUENCE_SEARCH 2003/10/14
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] HSE problem solved, new question 2003/10/15
- From: Oliver Hucke <ohucke AT u.washington.edu>
Re: [modeller_usage] HSE problem solved, new question 2003/10/16
- From: J B Procter <procter AT zbh.uni-hamburg.de>
[modeller_usage] How to discard overhangs in target sequence 2003/10/16
- From: Markus Fischer <Markus.Fischer AT po.uni-stuttgart.de>
Re: [modeller_usage] How to discard overhangs in target sequence 2003/10/16
- From: Oliver Hucke <ohucke AT u.washington.edu>
[modeller_usage] set sequence 2003/10/16
- From: Robert Farley <rfarley AT hsc.usc.edu>
[modeller_usage] Distorted Phe 2003/10/21
- From: "Angelo Favia" <favia AT farmchim.uniba.it>
Re: [modeller_usage] Distorted Phe 2003/10/21
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] Tetrameric protein-preserving symmetry 2003/10/23
- From: "David Piper" <David.Piper AT hmbg.utah.edu>
[modeller_usage] Adding NAD 2003/10/24
- From: Mengmeng Wang <bessiew AT mail.ukans.edu>
[modeller_usage] None 2003/10/27
- From: "Cevdet NACAR" <cevnacar AT marmara.edu.tr>
Re: [modeller_usage] None 2003/10/27
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] rdactio_534E> Command not recognized: INPUT : 2003/10/27
- From: Joseph Toth <Joseph.Toth AT tufts.edu>
RE: [modeller_usage] rdactio_534E> Command not recognized: INPUT : 2003/10/27
- From: "Eswar Narayanan" <eashwar AT salilab.org>
[modeller_usage] Bug in user distance restraints ? 2003/10/27
- From: "Thorsten Schweikardt" <thorsten AT uni-mainz.de>
[modeller_usage] Hello 2003/10/27
- From: "Chaitanya Reddy.A" <chaitanya AT msitprogram.net>
Re: [modeller_usage] Hello 2003/10/28
- From: J B Procter <procter AT zbh.uni-hamburg.de>
[modeller_usage] hello 2003/10/28
- From: "Chaitanya Reddy.A" <chaitanya AT msitprogram.net>
Re: [modeller_usage] hello 2003/10/28
- From: Andras Fiser <afiser AT aecom.yu.edu>
Re: [modeller_usage] Bug in user distance restraints ? 2003/10/28
- From: Oliver Hucke <ohucke AT u.washington.edu>
[modeller_usage] hello 2003/10/29
- From: "Chaitanya Reddy.A" <chaitanya AT msitprogram.net>
[modeller_usage] modelling problem 2003/11/04
- From: Francesco Musiani <fmusiani AT agrsci.unibo.it>
[modeller_usage] Installation on MacOSXvx 2003/11/06
- From: bose <bose.kochupurakkal AT weizmann.ac.il>
[modeller_usage] How many swap space does MODELLER need?? 2003/11/06
- From: "B.Liu" <bmbbl AT bms.leeds.ac.uk>
Re: [modeller_usage] How many swap space does MODELLER need?? 2003/11/06
- From: "Peter C. Lai" <sirmoo AT cowbert.2y.net>
Re: [modeller_usage] Installation on MacOSXvx 2003/11/06
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] Respected Sir. 2003/11/11
- From: "sameer hassan" <sameerhassan1 AT rediffmail.com>
[modeller_usage] modeling a dimer 2003/11/13
- From: "Rao, Guru" <guru.rao AT pioneer.com>
[modeller_usage] fix ligand atom positions during modelling 2003/11/14
- From: Peter Haebel <peter.haebel AT staff.uni-marburg.de>
RE: [modeller_usage] fix ligand atom positions during modelling 2003/11/14
- From: "Eswar Narayanan" <eashwar AT salilab.org>
RE: [modeller_usage] modeling a dimer 2003/11/14
- From: "Eswar Narayanan" <eashwar AT salilab.org>
[modeller_usage] Question (HELP !!) 2003/11/18
- From: Shunsaku Takeishi <shunt AT bio.sci.osaka-u.ac.jp>
[modeller_usage] Modeling Multidomain proteins 2003/11/18
- From: Tjaart de Beer <tjaart AT tuks.co.za>
[modeller_usage] Re: Question (HELP !!) 2003/11/18
- From: Modeller Caretaker <modeller-care@ucsf.edu>
Re: [modeller_usage] Modeling Multidomain proteins 2003/11/18
- From: "Raghurama P. Hegde" <rph AT physics.iisc.ernet.in>
[modeller_usage] problems with heteroatoms 2003/11/19
- From: "Knoll, Michael" <maverik AT z.zgs.de>
[modeller_usage] MacOS X Modeller 6v2 2003/11/20
- From: Jack Howarth <howarth AT nitro.med.uc.edu>
Re: [modeller_usage] MacOS X Modeller 6v2 2003/11/20
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] malign3d will not align multiple structures 2003/12/01
- From: Mark Daniels <markjd AT scripps.edu>
Re: [modeller_usage] malign3d will not align multiple structures 2003/12/01
- From: Mark Daniels <markjd AT scripps.edu>
[modeller_usage] problem in installing 2003/12/01
- From: rathankar rao <rathankar AT yahoo.com>
Re: [modeller_usage] problem in installing 2003/12/02
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] GTP RTF 2003/12/03
- From: devary AT jct.ac.il
Re: [modeller_usage] GTP RTF 2003/12/03
- From: Modeller Caretaker <modeller-care@ucsf.edu>
[modeller_usage] Upper limit distance restraint 2003/12/03
- From: "Miha Pavsic" <miha.pavsic AT ijs.si>
RE: [modeller_usage] GTP RTF 2003/12/03
- From: "Eswar Narayanan" <eashwar AT salilab.org>
RE: [modeller_usage] GTP RTF 2003/12/03
- From: "Eswar Narayanan" <eashwar AT salilab.org>
Re: [modeller_usage] Upper limit distance restraint 2003/12/04
- From: "Thorsten Schweikardt" <thorsten AT uni-mainz.de>
[modeller_usage] online interface 2003/12/04
- From: rathankar rao <rathankar AT yahoo.com>
[modeller_usage] Max templates 2003/12/14
- From: <Jenny.Carmichael AT csiro.au>
[modeller_usage] simple question 2003/12/15
- From: Michael Grabe <mgrabe AT itsa.ucsf.edu>
[modeller_usage] About rotamers ? 2003/12/18
- From: Mickael Krzeminski <mkrzemin AT pasteur.fr>
[modeller_usage] Gaps in pdb file 2003/12/22
- From: "MacFarlane, Amanda J." <amacfarlane AT ohri.ca>
Re: [modeller_usage] Gaps in pdb file 2003/12/22
- From: Andras Fiser <afiser AT aecom.yu.edu>
RE: [modeller_usage] Gaps in pdb file 2003/12/22
- From: "Eswar Narayanan" <eashwar AT salilab.org>
[modeller_usage] help! 2003/12/30
- From: nick jones <bloodbrother778 AT yahoo.com>

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