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Hi All,
After sending e-mail yesterday, I received several
e-mails and all told me I should see the .log file in the same directory. But I
am sure there is no .log file in the directory. I am using MODELLER 6v2 for
Windows and my operation system is Window 2000. I run "mod model-default" in
windows command prompt "C:\mod6v2\examples\tutorial-model>". Following is the
model-default.top file:
# Homology modelling by the MODELLER TOP routine
'model'.
INCLUDE
# Include the predefined TOP
routines
SET OUTPUT_CONTROL = 1 1 1 1
1 #
uncomment to produce a large log file
SET ALNFILE = 'alignment.ali' # alignment filename SET KNOWNS = '5fd1' # codes of the templates SET SEQUENCE = '1fdx' # code of the target SET ATOM_FILES_DIRECTORY = './:../atom_files' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 1 # index of the last model # (determines how many models to calculate) CALL ROUTINE =
'model'
# do homology modelling
After running "mod model-default", I only got six
files: "1fdx.V99990001, 1fdx.D00000001, 1fdx.B99990001, 1fdx.sch, 1fdx.rsr and
1fdx.ini. I can open the 1fdx.B99990001 by a viewer.
Thanks for all your help,
Dong
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