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How model two o more alignment automatic
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- Subject: How model two o more alignment automatic
- From: JP <>
- Date: Thu, 15 May 2003 11:16:51 -0400
I have two alignment , how I can automate the process for two o
more alignments only one file?
for example have this two alignment in one file "alignment.ali"
:
C; Alignment1
>P1;1efwA
structureX:1efw:162:A:300:A::::
GFVQVETPFLTKSTPEGARDFLVPYR---HEPG----------------LFYALPQSPQL
FKQMLMVAG-LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE--VE-----------
------DVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELK*
>P1;whi6464
sequence:whi6464:9::186:::::
GFVEVETPVLLKSTPEGAREFLVPTRTSASAPSVKSSIGGGPRESSSQPLFYALPQSPQQ
PKQLLIASGAVDRYYQIAKCFRDEDGRKDRQPEFTQVDLEMAWVSWGIEPSNCSQGDHNV
WRIGGKEVREIIERLIRKIWSTVEGIELPSSFTVMTYEEAMGRFGSDKPDTRFGLEVR*
C; Alignment2
>P1;1cqjD
structureX:1cqj:132:D:284:D::::
CKI--GIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFID
ILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEH-VTKPVVGYIAGVTAPKGK---RMG
HAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALK*
>P1;whi6880
sequence:whi6880:12::170:::::
CSMMDNIIASKLYRPGSVGYVSKSGGMSNELNNILSLVTNGTYEGIAIGGDRYPGSTFID
HLLRYENDPECKMLVLLGEVGGIEEYRVIEAVKKGLIKKPIVAWAIGTCAKMFTTEVQFG
HAGSMANSDMETADAKNAAMRKAGFIVPDTFEDLPQVLR*
and which is the configuration for file "TOP"?
thanks