------ Forwarded Message
From: Denis Volkov <>
X-Mailer: The Bat! (v1.52f)
Reply-To: Denis Volkov <>
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To: modeller <>
Subject: model_refinment
Hello everyone,
I successfully used Modeller to model unknown protein. Now I'd like
to sent my model to Protein Data Bank. So i checked my structure
using Procheck and find some problems, namely some bad contacts,etc.
In order to clean a structure i used Charmm program for energy
minimization. But after it i obtain structure with bad angles and
bond lengths. Can anybody know how to clean a structure well for
PDBank and what programs should be use for it.
Thanks in advance
Denis Volkov
Enzyme Laboratory,IBCH RAS
--
Best regards,
Denis ">mailto:
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