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Fwd: Re: how to ERROR: MODEL atom not classified: TYR:OT1 TYR



Forwarding to list.

----- Forwarded message from Darren Thompson <> -----

Date: Wed, 10 Sep 2003 13:37:34 -0700
Subject: Re: how to ERROR: MODEL atom not classified:  TYR:OT1  TYR
From: Darren Thompson <>
To: Modeller Caretaker <>
X-Mailer: Apple Mail (2.552)

does your template have dihydroxytyrosine, OT is not the standard pdb 
nomenclature for oxygen atoms.  Maybe OT is oxygen terminal? Try 
editing the pdb file and remove the T
On Wednesday, September 10, 2003, at 10:38 AM, Modeller Caretaker wrote:

>Forwarding to list.
>
>----- Forwarded message from Sherin Yang <> -----
>
>From: "Sherin Yang" <>
>To: <>
>Subject: how to ERROR: MODEL atom not classified:  TYR:OT1  TYR
>Date: Wed, 10 Sep 2003 10:54:04 +0800
>X-Mailer: Microsoft Outlook Express 6.00.2800.1106
>
>Hi, all
>
>I want to use Align2D to align a sequence with a structure with pdb 
>format. I can't get the proper result. The log file tell me the 
>following wrong:
>
>iatmcls_286W> MODEL atom not classified:  TYR:OT1  TYR
>iatmcls_286W> MODEL atom not classified:  TYR:OT2  TYR
>
>Who can tell me how to resolve such problem?
>
>Thank you!
>
>Sherin Yang
>
>
>----- End forwarded message -----
>
>

----- End forwarded message -----