Re: [modeller_usage] Modeling Multidomain proteins

["Raghurama P. Hegde" <rph AT physics.iisc.ernet.in>]

Hi Tjaart, 

There are two 'SET KNOWNS' in your top script, instead try this 

SET KNOWNS  '1eye' '1DY3'

I don't knwo if it'll make a difference but I always give them all in one 
line and it works for me!

HTH
raghu


> Hi there
> 
> I would like to model a multidomain protein but when I follow the 
> instructions given in the manual I only only get a model based on the 
> first structure in my alignment file. It totally ignores the second 
> structure. There is no overlap between the domains.
> 
> The top file and alignment file is attached.
> 
> Can anyone help?
> 
> Thanks!!
>