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Dear MODELLER developers/users,
I have a question regarding caculating RMSD between
residues. Using MODELLER command SUPERPOSE, we can get number of residues that
within some cutoff (e.g. 3A).But how can we get which exact pairs of
residues are within this cutoff?
We also tried COMPARE command, but it does not give us detail
of RMSD between residues given an alignment.
Do you know what is the top command to do so?
Thanks
Xia Jiang
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Prof. Sjolander's Group
BioEngineering Dept.
UC Berkeley
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