Modeller_Usage Mailing List (by date)

• Thread Index

• [modeller_usage] Problems with modelling with ligand 2006/01/03
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] modelling with ligands again! mainly water issues 2006/01/03
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] Modelling with ligands - Not Working! 2006/01/03
  • From: "Joanne Hanna" <J.F.Hanna@warwick.ac.uk>
• [modeller_usage] Re: modeller_usage Digest, Vol 5, Issue 2 2006/01/03
  • From: "Mohsen, Al-Walid" <mohsaw@chp.edu>
• [modeller_usage] Re: Adding water molecules as ligands (minor corrections); modeller_usage Digest, Vol 5, Issue 3 2006/01/03
  • From: "Mohsen, Al-Walid" <mohsaw@chp.edu>
• [modeller_usage] modelling with water again 2006/01/03
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] Help needed 2006/01/06
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] Re: Ligand clues and water blues 2006/01/06
  • From: "Mohsen, Al-Walid" <mohsaw@chp.edu>
• [modeller_usage] FW: Ligand clues and water blues (correction) 2006/01/06
  • From: "Mohsen, Al-Walid" <mohsaw@chp.edu>
• Re: [modeller_usage] Help needed 2006/01/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Re: Ligand clues and water blues 2006/01/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] varied models 2006/01/06
  • From: "Inbal Halperin" <inbal@helix.stanford.edu>
• [modeller_usage] varied models 2006/01/06
  • From: "Inbal Halperin" <inbal@helix.stanford.edu>
• [modeller_usage] Modeling antibody 2006/01/09
  • From: BiplabBose@bits-pilani.ac.in
• [modeller_usage] adminaddress 2006/01/12
  • From: "N.Arun Prasanna" <prasanna@bits-pilani.ac.in>
• Re: [modeller_usage] adminaddress 2006/01/12
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Re: modeller_usage Digest, Vol 5, Issue 7 2006/01/13
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] Advantages of manual protein sequence alignment between target and template [Very urgent please] 2006/01/17
  • From: rajesh rengaraj <rajesh_rengaraj@yahoo.co.in>
• [modeller_usage] about the installation of modeller8v1 2006/01/18
  • From: Shulin Zhuang <shulin.zhuang@gmail.com>
• [modeller_usage] Using an external program to calculate an element of the energy function 2006/01/18
  • From: Lucas Bleicher <lbleicher@yahoo.com>
• Re: [modeller_usage] about the installation of modeller8v1 2006/01/18
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Using an external program to calculate an element of the energy function 2006/01/18
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] QUERY 2006/01/20
  • From: uday kumar <udaykumar.in@gmail.com>
• [modeller_usage] successive model building 2006/01/21
  • From: adak Nasiripour <nasiripour_a@yahoo.com>
• [modeller_usage] Unexpected keyword argument 2006/01/25
  • From: Eva María Priego <eva_priego@hotmail.com>
• Re: [modeller_usage] Unexpected keyword argument 2006/01/25
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] alignment matrix 2006/01/29
  • From: "Schulze, Diana" <dschulze@ipb-halle.de>
• Re: [modeller_usage] alignment matrix 2006/01/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] problem with ligand attachment 2006/01/30
  • From: Natasha Khan <khanatasha@gmail.com>
• [modeller_usage] fix_offsets to align certain residues 2006/01/30
  • From: jf163201@ohio.edu
• Re: [modeller_usage] fix_offsets to align certain residues 2006/01/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] helix alignment with gap 2006/02/02
  • From: Guillaume LETELLIER <guillaume.letellier@cea.fr>
• Re: [modeller_usage] helix alignment with gap 2006/02/02
  • From: Vivek Sharma <vivek.viv.sharma@gmail.com>
• [modeller_usage] building in a loop 2006/02/02
  • From: jo hanna <jfhanna@gmail.com>
• Re: [modeller_usage] helix alignment with gap 2006/02/02
  • From: Guillaume LETELLIER <guillaume.letellier@cea.fr>
• Re: [modeller_usage] helix alignment with gap 2006/02/02
  • From: Mensur Dlakic <mdlakic@montana.edu>
• Re: [modeller_usage] helix alignment with gap 2006/02/02
  • From: Guillaume LETELLIER <guillaume.letellier@cea.fr>
• [modeller_usage] loop modelling DOPE score 2006/02/03
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] HELP!! Refine part of model 2006/02/03
  • From: "Matt wagner" <mattwagner@hotmail.com>
• [modeller_usage] Help! 2006/02/05
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] Help! 2006/02/06
  • From: jo hanna <jfhanna@gmail.com>
• [modeller_usage] dna modelling 2006/02/06
  • From: rathankar rao <rathankar@yahoo.com>
• Re: [modeller_usage] dna modelling 2006/02/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Add loops to a protein 2006/02/07
  • From: Mingfeng Yang <mfyang@gmail.com>
• [modeller_usage] (no subject) 2006/02/07
  • From: Anna Kaczynska <ak471@bard.edu>
• Re: [modeller_usage] Add loops to a protein 2006/02/07
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Protocol of modeling a membrane protein 2006/02/08
  • From: Qing Zhang <qingzhang_nyu@yahoo.com>
• [modeller_usage] How does Modeller handle multiple structures? 2006/02/10
  • From: Zoe Katsimitsoulia <zkatsim@nimr.mrc.ac.uk>
• Re: [modeller_usage] How does Modeller handle multiple structures? 2006/02/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] How does Modeller handle multiple structures? 2006/02/10
  • From: Vivek Sharma <vivek.viv.sharma@gmail.com>
• [modeller_usage] How to make models from multiple sequences e.g an entire proteome 2006/02/12
  • From: "Antony" <d235204a@bio.kyutech.ac.jp>
• [modeller_usage] Check_a_337E> Structure not read in 2006/02/15
  • From: "David Mathog" <mathog@caltech.edu>
• Re: [modeller_usage] Check_a_337E> Structure not read in 2006/02/15
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] what is the correct alignment 2006/02/16
  • From: "rudra" <rudra@bic.boseinst.ernet.in>
• [modeller_usage] Request for correcting errors 2006/02/19
  • From: "Aparna Apurba Roy" <aparna22231@rediffmail.com>
• Re: [modeller_usage] Request for correcting errors 2006/02/20
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] what is the correct alignment 2006/02/21
  • From: Karsten SUHRE <karsten.suhre@igs.cnrs-mrs.fr>
• [modeller_usage] Help needed concerning the alignment file 2006/02/21
  • From: doppelt olivia <olivia_doppelt@yahoo.fr>
• [modeller_usage] modeller ga341 score 2006/02/21
  • From: "jo hanna" <jfhanna@gmail.com>
• [modeller_usage] alingment score using salign 2006/02/21
  • From: "jo hanna" <jfhanna@gmail.com>
• Re: [modeller_usage] modeller ga341 score 2006/02/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Help needed concerning the alignment file 2006/02/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] modeller ga341 score 2006/02/21
  • From: Lucas Bleicher <lbleicher@yahoo.com>
• [modeller_usage] as1 matrix 2006/02/21
  • From: "Schulze, Diana" <dschulze@ipb-halle.de>
• Re: [modeller_usage] modeller ga341 score 2006/02/22
  • From: "jo hanna" <jfhanna@gmail.com>
• Re: [modeller_usage] as1 matrix 2006/02/22
  • From: Alden Huang <alden.huang@gmail.com>
• Re: [modeller_usage] modeller ga341 score 2006/02/23
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] "Structure not read in" error 2006/02/23
  • From: "Omid Khalouei" <omid9dr18@hotmail.com>
• Re: [modeller_usage] "Structure not read in" error 2006/02/23
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] "Structure not read in" error 2006/02/23
  • From: "Omid Khalouei" <omid9dr18@hotmail.com>
• Re: [modeller_usage] "Structure not read in" error 2006/02/23
  • From: "Omid Khalouei" <omid9dr18@hotmail.com>
• [modeller_usage] pls help me to identify. 2006/02/24
  • From: smitha vishwas <smithavishwas@yahoo.co.in>
• Re: [modeller_usage] pls help me to identify. 2006/02/24
  • From: Ralf Schmid <ralf@bch.ed.ac.uk>
• [modeller_usage] query 2006/02/24
  • From: abhilasha kirti <abhilashakirti@yahoo.co.in>
• Re: [modeller_usage] query 2006/02/24
  • From: "Raghurama P. Hegde" <rph@physics.iisc.ernet.in>
• Re: [modeller_usage] "Structure not read in" error 2006/02/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] "Structure not read in" error 2006/02/24
  • From: Lucas Bleicher <lbleicher@yahoo.com>
• Re: [modeller_usage] "Structure not read in" error 2006/02/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] ask for your kindful help 2006/02/25
  • From: "典范" <lidianfan@163.com>
• [modeller_usage] query?? 2006/02/27
  • From: madhurima das <madhu_bioinformatics@yahoo.co.in>
• Re: [modeller_usage] query?? 2006/02/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] reg:selecting the template. 2006/02/28
  • From: smitha vishwas <smithavishwas@yahoo.co.in>
• [modeller_usage] symmetry on mod8v1 2006/02/28
  • From: Giovanni Grazioso <giovanni.grazioso@unimi.it>
• [modeller_usage] nselat__596E> Atom index is out of range (iatm, natm) 2006/02/28
  • From: "MGiò" <magiofer@gmail.com>
• [modeller_usage] ligands 2006/02/28
  • From: "jo hanna" <jfhanna@gmail.com>
• Re: [modeller_usage] ligands 2006/02/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] symmetry on mod8v1 2006/02/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Modeller 8v2 release 2006/02/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] nselat__596E> Atom index is out of range (iatm, natm) 2006/02/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage]molecular modelling with multiple chains 2006/02/28
  • From: "典范" <lidianfan@163.com>
• [modeller_usage] Re: [modeller_announce] Modeller 8v2 release 2006/02/28
  • From: Liu Shiyong <syliu@mdl.ipc.pku.edu.cn>
• Re: [modeller_usage]molecular modelling with multiple chains 2006/03/01
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] nselat__596E> Atom index is out of range (iatm, natm) 2006/03/01
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] SET DEVIATION 2006/03/02
  • From: Adam C Marko <marko@psc.edu>
• Re: [modeller_usage] SET DEVIATION 2006/03/02
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] symmetry on mod8v2 - part 2 2006/03/03
  • From: Giovanni Grazioso <giovanni.grazioso@unimi.it>
• Re: [modeller_usage] symmetry on mod8v2 - part 2 2006/03/03
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Advice on Modeller usage 2006/03/05
  • From: "Nagesh Chakka" <nagesh.chakka@anu.edu.au>
• Re: [modeller_usage] Advice on Modeller usage 2006/03/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] model.mutate problem 2006/03/08
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• [modeller_usage] using BLAST to find templates for modelling 2006/03/09
  • From: "Nick Fusseder" <fromdowntown@gmx.de>
• Re: [modeller_usage] model.mutate problem 2006/03/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] using BLAST to find templates for modelling 2006/03/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Loop 2006/03/11
  • From: BiplabBose@bits-pilani.ac.in
• Re: [modeller_usage] model.mutate problem 2006/03/12
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• [modeller_usage] File name control problem 2006/03/13
  • From: "서주현"<seojoohyun@nate.com>
• [modeller_usage] Sequence consensus 2006/03/13
  • From: Cassiano <carromeu@usp.br>
• Re: [modeller_usage] File name control problem 2006/03/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] any .log indication of .md_level results? 2006/03/13
  • From: Mark Daniels <markjd@scripps.edu>
• Re: [modeller_usage] any .log indication of .md_level results? 2006/03/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Report of final energy 2006/03/13
  • From: "서주현"<seojoohyun@nate.com>
• [modeller_usage] Dope Vs PROSA2003 2006/03/14
  • From: "jo hanna" <jfhanna@gmail.com>
• Re: [modeller_usage] Report of final energy 2006/03/14
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] hydrogen atom name 2006/03/14
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• Re: [modeller_usage] hydrogen atom name 2006/03/14
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] hydrogen atom name 2006/03/14
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• [modeller_usage] Using a Modeller model as input to repeat the process 2006/03/15
  • From: Zoe Katsimitsoulia <zkatsim@nimr.mrc.ac.uk>
• [modeller_usage] Perl Script to plot DOPE 2006/03/16
  • From: "Vimalkumar Velayudhan" <vimalkumarvelayudhan@gmail.com>
• [modeller_usage] ordering of atoms in the PDB 2006/03/16
  • From: "Robin Stamler" <stamlerj@ucmail.uc.edu>
• [modeller_usage] DOPE 2006/03/16
  • From: helenaa@webmail.ibilce.unesp.br
• Re: [modeller_usage] ordering of atoms in the PDB 2006/03/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] DOPE 2006/03/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] build a homopentamer 2006/03/17
  • From: Giovanni Grazioso <giovanni.grazioso@unimi.it>
• [modeller_usage] Protein + Metal Ion 2006/03/19
  • From: Anshul Awasthi <anshul.awasthi@stonebow.otago.ac.nz>
• Re: [modeller_usage] Protein + Metal Ion 2006/03/19
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Protein + Metal Ion 2006/03/21
  • From: Anshul Awasthi <anshul.awasthi@stonebow.otago.ac.nz>
• [modeller_usage] Please help me with tutorial error 2006/03/21
  • From: Claire Wei <clairewei2000@yahoo.com>
• Re: [modeller_usage] Please help me with tutorial error 2006/03/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] calculate RMSD 2006/03/22
  • From: "Xia Jiang" <xiajiang@berkeley.edu>
• [modeller_usage] Objective Function vs. Molecular PDF 2006/03/23
  • From: Leyla Celik <lc@chem.au.dk>
• [modeller_usage] error saying max_pdf exceeded reg 2006/03/24
  • From: "Bala Murugan" <leadbala@rediffmail.com>
• [modeller_usage] Problem in running Modeller 8v2 2006/03/26
  • From: Nagesh Chakka <nagesh.chakka@anu.edu.au>
• [modeller_usage] Dealing with flexible regions 2006/03/27
  • From: Lucas Bleicher <lbleicher@yahoo.com>
• Re: [modeller_usage] Problem in running Modeller 8v2 2006/03/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] error saying max_pdf exceeded reg 2006/03/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Objective Function vs. Molecular PDF 2006/03/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] side chain packing issues 2006/03/27
  • From: "teca calcagno galvao" <tecagalvao@hotmail.com>
• [modeller_usage] starting Modeller program 2006/03/27
  • From: "Dinah Farrington" <farrind@mail.amc.edu>
• Re: [modeller_usage] starting Modeller program 2006/03/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] problem in running modeller8v0 2006/03/28
  • From: aneesh goyal <aneesh_g1@yahoo.com>
• Re: [modeller_usage] problem in running modeller8v0 2006/03/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Objective Function vs. Molecular PDF 2006/03/28
  • From: Leyla Celik <lc@chem.au.dk>
• [modeller_usage] About the topini.patch for 8v2 and the energy 2006/03/29
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• Re: [modeller_usage] About the topini.patch for 8v2 and the energy 2006/03/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] About the topini.patch for 8v2 and the energy 2006/03/29
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• Re: [modeller_usage] Dealing with flexible regions 2006/03/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Modeller usage with Python 2.4? 2006/03/30
  • From: Dow_Hurst <dhurst@mindspring.com>
• Re: [modeller_usage] Modeller usage with Python 2.4? 2006/03/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Modeller usage with Python 2.4? 2006/04/02
  • From: Dow Hurst <Dow.Hurst@mindspring.com>
• [modeller_usage] Weighing the restraints differenlty on the modeller-fly 2006/04/03
  • From: Mehmet SEN <senmehmetsen@yahoo.com>
• Re: [modeller_usage] Weighing the restraints differenlty on the modeller-fly 2006/04/05
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] model.pick_atoms problem 2006/04/06
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• Re: [modeller_usage] model.pick_atoms problem 2006/04/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] automodel optimization 2006/04/07
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• Re: [modeller_usage] automodel optimization 2006/04/07
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Getting alignment positions fixed 2006/04/09
  • From: Paul Wilhelm Elsinghorst <paul@uni-bonn.de>
• Re: [modeller_usage] Getting alignment positions fixed 2006/04/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Loop bias 2006/04/09
  • From: Joel Tyndall <joel.tyndall@otago.ac.nz>
• Re: [modeller_usage] Loop bias 2006/04/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Problem with MODELLER6v2 2006/04/12
  • From: Ludovic Pétain <lpetain@euroscreen.be>
• Re: [modeller_usage] Problem with MODELLER6v2 2006/04/12
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] using two templates in Modeller8v2 2006/04/12
  • From: "Thomas K. Weldeghiorghis" <tkw@ccrc.uga.edu>
• Re: [modeller_usage] using two templates in Modeller8v2 2006/04/12
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Running two versions of MODELLER 2006/04/13
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• [modeller_usage] one question about modeller 2006/04/13
  • From: "biocompr" <biocompr@163.com>
• Re: [modeller_usage] Running two versions of MODELLER 2006/04/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] ASGL Files 2006/04/18
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• [modeller_usage] help 2006/04/19
  • From: "biocompr" <biocompr@163.com>
• [modeller_usage] CHAINS_all Updates 2006/04/20
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• Re: [modeller_usage] CHAINS_all Updates 2006/04/20
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Re:plotting dope values 2006/04/21
  • From: "Prabhakar. G." <prabha.ganesan@gmail.com>
• [modeller_usage] rotameric state in MUTATE_MODEL 2006/04/21
  • From: Sridhar Acharya <sridhar@cdfd.org.in>
• Re: [modeller_usage] rotameric state in MUTATE_MODEL 2006/04/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] General Question 2006/04/23
  • From: "Brandon Guida" <biomicrogen@gmail.com>
• [modeller_usage] Concatenating models 2006/04/24
  • From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
• Re: [modeller_usage] General Question 2006/04/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Concatenating models 2006/04/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Mutiple protein templates 2006/04/25
  • From: "Sivaram I" <sivaraminguva@gmail.com>
• Re: [modeller_usage] Mutiple protein templates 2006/04/25
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Problem with modeller8v2 2006/04/26
  • From: Ludovic Pétain <lpetain@euroscreen.be>
• [modeller_usage] Regarding > Compare.py < execution 2006/04/26
  • From: "Robert Selwyne" <robert@jinr.ru>
• [modeller_usage] Problem with evaluate_model.py 2006/04/26
  • From: Eva María Priego <eva_priego@hotmail.com>
• Re: [modeller_usage] Problem with modeller8v2 2006/04/26
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Regarding > Compare.py < execution 2006/04/26
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Problem with evaluate_model.py 2006/04/26
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Modelling of the interface of a protein complex 2006/04/27
  • From: Karsten SUHRE <karsten.suhre@igs.cnrs-mrs.fr>
• [modeller_usage] (no subject) 2006/04/27
  • From: "Robert Selwyne" <robert@jinr.ru>
• [modeller_usage] PDB id's found in buildtarget.py is missing in sequence database?? 2006/04/27
  • From: "Robert Selwyne" <robert@jinr.ru>
• [modeller_usage] The First African Structural Biology Conference]] 2006/04/30
  • From: skwofie@mail.biotech.uwc.ac.za
• [modeller_usage] FThe First African Structural Biology Conference 2006/04/30
  • From: skwofie@mail.biotech.uwc.ac.za
• [modeller_usage] The First African Structural Biology Conference 2006/04/30
  • From: skwofie@mail.biotech.uwc.ac.za
• [modeller_usage] Re: PDB id's found in buildtarget.py is missing in sequence database?? 2006/04/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] CA-CA restraints 2006/05/09
  • From: Mensur Dlakic <mdlakic@montana.edu>
• Re: [modeller_usage] CA-CA restraints 2006/05/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] CA-CA restraints 2006/05/09
  • From: Mensur Dlakic <mdlakic@montana.edu>
• [modeller_usage] complex modelling 2006/05/09
  • From: "Bianca Flores" <viankys@hotmail.com>
• [modeller_usage] loop modeling limits 2006/05/10
  • From: lorix <Loris.Moretti@pharm.unige.ch>
• [modeller_usage] specify sequence ranges for salign/align2d 2006/05/10
  • From: Douglas Kojetin <douglas.kojetin@gmail.com>
• Re: [modeller_usage] loop modeling limits 2006/05/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] specify sequence ranges for salign/align2d 2006/05/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] ERROR: No alignment 2006/05/11
  • From: "Joydeep" <joy_alwayslate@excite.com>
• Re: [modeller_usage] ERROR: No alignment 2006/05/11
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] CA-CA restraints 2006/05/11
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] NO PDB 2006/05/11
  • From: "Joydeep" <joy_alwayslate@excite.com>
• Re: [modeller_usage] NO PDB 2006/05/12
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Re : modeller_usage Digest, Vol 5, Issue 63 2006/05/15
  • From: doppelt olivia <olivia_doppelt@yahoo.fr>
• [modeller_usage] Modelling problem 2006/05/16
  • From: "Joydeep" <joy_alwayslate@excite.com>
• [modeller_usage] exposed core in generated structures 2006/05/17
  • From: "Daniel Sullivan" <dmsulliv@gmail.com>
• [modeller_usage] absolute restraints 2006/05/17
  • From: Michael Grabe <Michael.Grabe@ucsf.edu>
• Re: [modeller_usage] absolute restraints 2006/05/17
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] About the Modeller output in PDB format 2006/05/21
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• Re: [modeller_usage] About the Modeller output in PDB format 2006/05/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] GA341/DOPE/MolPDF which one for model selection? 2006/05/22
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• [modeller_usage] Model a Tetramer from a Dimer 2006/05/22
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• Re: [modeller_usage] GA341/DOPE/MolPDF which one for model selection? 2006/05/22
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Model a Tetramer from a Dimer 2006/05/22
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Model protein with ligand bound 2006/05/23
  • From: "N.Arun Prasanna" <prasanna@bits-pilani.ac.in>
• [modeller_usage] code 2006/05/23
  • From: "N.Arun Prasanna" <prasanna@bits-pilani.ac.in>
• Re: [modeller_usage] Model protein with ligand bound 2006/05/23
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] code 2006/05/25
  • From: "N.Arun Prasanna" <prasanna@bits-pilani.ac.in>
• Re: [modeller_usage] code 2006/05/25
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] What's the difference of "refinement level" in MD 2006/05/28
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• Re: [modeller_usage] What's the difference of "refinement level" in MD 2006/05/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Imposing dihedral restraints 2006/05/29
  • From: "Vivek Sharma" <vivek.viv.sharma@gmail.com>
• Re: [modeller_usage] Imposing dihedral restraints 2006/05/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Averaged RMSD for 100 models 2006/05/31
  • From: Robert Selwyne <robby_150@yahoo.co.in>
• Re: [modeller_usage] Averaged RMSD for 100 models 2006/05/31
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Averaged RMSD for 100 models 2006/05/31
  • From: Yun He <jarod@spg.biosci.tsinghua.edu.cn>
• Re: [modeller_usage] Averaged RMSD for 100 models 2006/06/01
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Save y0ur budget, p0werful medicine for a l0w price. 2006/06/02
  • From: Juanita <sali@salilab.org>
• [modeller_usage] DOPE profile 2006/06/03
  • From: Tom Burghardt <burghardt@mayo.edu>
• [modeller_usage] How can I get MolPDF of an existed PDB file of an model 2006/06/03
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• Re: [modeller_usage] loop optimization problem 2006/06/07
  • From: Agnieszka Szarecka <szarecka+@pitt.edu>
• Re: [modeller_usage] loop optimization problem 2006/06/07
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] How can I get MolPDF of an existed PDB file of an model 2006/06/07
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] DOPE profile 2006/06/07
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] loop modelling 2006/06/08
  • From: hori koshii <phorikoshii@yahoo.com>
• Re: [modeller_usage] loop modelling 2006/06/08
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Using template's ligand as model's ligand 2006/06/09
  • From: "Frederico Arnoldi" <fredgca@hotmail.com>
• Re: [modeller_usage] How can I get MolPDF of an existed PDB file of an model 2006/06/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Modeling core residues without loop regions 2006/06/13
  • From: "Vimalkumar Velayudhan" <vimalkumarvelayudhan@gmail.com>
• [modeller_usage] rdpir___648E> Alignment sequence not found in PDB file 2006/06/14
  • From: "Michael Mazanetz" <paxmm2@nottingham.ac.uk>
• Re: [modeller_usage] Imposing dihedral restraints 2006/06/14
  • From: "Vivek Sharma" <vivek.viv.sharma@gmail.com>
• [modeller_usage] Modeling a Chimera 2006/06/14
  • From: "Toty Santos" <totybio03n@hotmail.com>
• [modeller_usage] Modeling a Chimera 2006/06/14
  • From: "Toty Santos" <totybio03n@hotmail.com>
• Re: [modeller_usage] rdpir___648E> Alignment sequence not found in PDB file 2006/06/14
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Modeling a Chimera 2006/06/14
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] alignment using multiple templates 2006/06/15
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] alignment using multiple templates 2006/06/15
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Questions on loop modelling 2006/06/16
  • From: hori koshii <phorikoshii@yahoo.com>
• Re: [modeller_usage] Questions on loop modelling 2006/06/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Questions on loop modelling 2006/06/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] homomultimers and symmetry 2006/06/19
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] homomultimers and symmetry 2006/06/19
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Using template's ligand as model's ligand 2006/06/19
  • From: "Ricardo Nicoluci" <nicoluci@gmail.com>
• [modeller_usage] Restraints to apply for nucleic acid 2006/06/20
  • From: Charlotte Habegger-Polomat <chpoloma@rsvs.ulaval.ca>
• [modeller_usage] question about multiple alignment tutorial 2006/06/20
  • From: Mike White <mikewhite@drexel.edu>
• [modeller_usage] error message 2006/06/26
  • From: "Madhan Kumar A" <madhankrish@gmail.com>
• Re: [modeller_usage] error message 2006/06/27
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Query 2006/06/27
  • From: "Madhan Kumar A" <madhankrish@gmail.com>
• [modeller_usage] How Modeller avoid CA clashes? 2006/06/29
  • From: Yun He <jarod@nlbmol.ibp.ac.cn>
• Re: [modeller_usage] How Modeller avoid CA clashes? 2006/06/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] align_2d vs salign 2006/06/30
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] align_2d vs salign 2006/06/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Query 2006/06/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] modeller 2006/07/01
  • From: Patrycja Barbara Lewkowicz <135013@student.pwr.wroc.pl>
• Re: [modeller_usage] modeller 2006/07/01
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] I have problem my protien has some area seems to be extra 2006/07/02
  • From: "Zartasha Mustansar" <zartashas@gmail.com>
• Re: [modeller_usage] I have problem my protien has some area seems to be extra 2006/07/03
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Metal ions 2006/07/06
  • From: Joel Tyndall <joel.tyndall@otago.ac.nz>
• Re: [modeller_usage] Metal ions 2006/07/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Model assessment - GA341 2006/07/08
  • From: Cassiano <carromeu@usp.br>
• Re: [modeller_usage] Model assessment - GA341 2006/07/08
  • From: Eswar Narayanan <eashwar@salilab.org>
• [modeller_usage] Tyrosinekinase-Modelling 2006/07/10
  • From: Torsten Stauder <stauder@oncsignaling-mainz.de>
• Re: [modeller_usage] Tyrosinekinase-Modelling 2006/07/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Tyrosinekinase-Modelling 2006/07/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] mutating the model 2006/07/12
  • From: "Prabhakar. G." <prabha.ganesan@gmail.com>
• Re: [modeller_usage] mutating the model 2006/07/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] [ question ] atom files? 2006/07/21
  • From: "Cathy Chang" <aochang@ucsd.edu>
• Re: [modeller_usage] [ question ] atom files? 2006/07/21
  • From: "Frederico Arnoldi" <fredgca@hotmail.com>
• Re: [modeller_usage] [ question ] atom files? 2006/07/21
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] modelling fragments 2006/07/25
  • From: Viktor Hornak <hornak@csb.sunysb.edu>
• Re: [modeller_usage] modelling fragments 2006/07/25
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] [Modeler] Question about this alignment 2006/07/26
  • From: Hoffmann <oasf2004@yahoo.com>
• Re: [modeller_usage] [Modeler] Question about this alignment 2006/07/26
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] [ help ] exceeded maxmol_pdf? 2006/07/26
  • From: "Cathy Chang" <aochang@ucsd.edu>
• [modeller_usage] I don't know how to get the file pdb_95.pir in my case, plz, tell me what to do. 2006/07/29
  • From: "Ngo Duc Tri" <ngoductri@gmail.com>
• [modeller_usage] Error in "Unknown residue type, position, sequence" once more. 2006/07/30
  • From: "Ngo Duc Tri" <ngoductri@gmail.com>
• Re: [modeller_usage] Error in "Unknown residue type, position, sequence" once more. 2006/07/31
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] I don't know how to get the file pdb_95.pir in my case, plz, tell me what to do. 2006/07/31
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] handling missing residues in pdb files when doing multiple alignments 2006/07/31
  • From: Mike White <mikewhite@drexel.edu>
• [modeller_usage] I have errors in the build_profile() command, plx help me! 2006/08/01
  • From: "Ngo Duc Tri" <ngoductri@gmail.com>
• [modeller_usage] secondary structures in homo trimers 2006/08/01
  • From: "Prabhakar. G." <prabha.ganesan@gmail.com>
• Re: [modeller_usage] secondary structures in homo trimers 2006/08/01
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] [Fwd: "bad ulimit" when running Modeller on solaris] 2006/08/03
  • From: "Nicolas Fusseder" <fusseder@liai.org>
• Re: [modeller_usage] [Fwd: "bad ulimit" when running Modeller on solaris] 2006/08/03
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Help :How I get dop.dat 2006/08/06
  • From: li bai <javacfish@yahoo.com.cn>
• Re: [modeller_usage] Help :How I get dop.dat 2006/08/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Help:analyse .profile 2006/08/06
  • From: li bai <javacfish@yahoo.com.cn>
• [modeller_usage] How analyse "model_segment" 2006/08/07
  • From: li bai <javacfish@yahoo.com.cn>
• [modeller_usage] enforcing symmetry in loop refinement 2006/08/10
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] enforcing symmetry in loop refinement 2006/08/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] dope energy of template 2006/08/18
  • From: caj <caj@biosci.ki.se>
• Re: [modeller_usage] dope energy of template 2006/08/18
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Assess model quality with multi chains 2006/08/23
  • From: bmbbl@leeds.ac.uk
• Re: [modeller_usage] Assess model quality with multi chains 2006/08/23
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] CHARMM atom type is out of range 2006/08/28
  • From: zzj <zzjsail@gmail.com>
• Re: [modeller_usage] CHARMM atom type is out of range 2006/08/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Hello,everyone, what are CA CB atoms? 2006/08/29
  • From: li bai <javacfish@yahoo.com.cn>
• Re: [modeller_usage] Hello,everyone, what are CA CB atoms? 2006/08/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] CHARMM atom type is out of range 2006/08/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] top to python (+ symmetry restraints) 2006/08/30
  • From: yalini.pathy@yale.edu
• Re: [modeller_usage] top to python (+ symmetry restraints) 2006/08/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] pdb output 2006/08/31
  • From: yalini.pathy@yale.edu
• [modeller_usage] No PDB output 2006/09/02
  • From: yalini.pathy@yale.edu
• Re: [modeller_usage] No PDB output - fixed! 2006/09/02
  • From: yalini.pathy@yale.edu
• [modeller_usage] structural alignment 2006/09/05
  • From: "Prabhakar. G." <prabha.ganesan@gmail.com>
• [modeller_usage] basic modeling problem 2006/09/10
  • From: "Sana Bilal" <sanabilal@gmail.com>
• [modeller_usage] DOPE calculation for multiple models 2006/09/10
  • From: yalini.pathy@yale.edu
• [modeller_usage] protein 3 D structure alignment 2006/09/11
  • From: "drugdesign" <drugdesign@yandex.ru>
• [modeller_usage] The number of sequences in CHAINS_all.seq 2006/09/19
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• Re: [modeller_usage] The number of sequences in CHAINS_all.seq 2006/09/19
  • From: "Zhiqiang Ye" <yezhiqiang@gmail.com>
• Re: [modeller_usage] The number of sequences in CHAINS_all.seq 2006/09/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] DOPE calculation for multiple models 2006/09/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] minimum size of loop for refinement? 2006/09/28
  • From: Mike White <mikewhite@drexel.edu>
• [modeller_usage] Protein not accepted 2006/10/02
  • From: Giacomo Bastianelli <gbastian@pasteur.fr>
• Re: [modeller_usage] Protein not accepted 2006/10/02
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] protein 3 D structure alignment 2006/10/02
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] How to calculate amino acid similarity and identity 2006/10/05
  • From: James T Metz <james.metz@abbott.com>
• [modeller_usage] (no subject) 2006/10/06
  • From: bestkarollo <bestkarollo@tlen.pl>
• Re: [modeller_usage] (no subject) 2006/10/06
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] CORRECT SECOND LINE with CHAIN ID 2006/10/09
  • From: bestkarollo <bestkarollo@tlen.pl>
• Re: [modeller_usage] CORRECT SECOND LINE with CHAIN ID 2006/10/09
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] (no subject) 2006/10/10
  • From: Giacomo Bastianelli <gbastian@pasteur.fr>
• Re: [modeller_usage] (no subject) 2006/10/10
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] regarding modeller usage 2006/10/10
  • From: "harpreet singh" <harpreetsingh05@hotmail.com>
• Re: [modeller_usage] regarding modeller usage 2006/10/11
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] dope score for multiple template 2006/10/12
  • From: "Cevdet NACAR" <cevnacar@marmara.edu.tr>
• Re: [modeller_usage] dope score for multiple template 2006/10/12
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] modeller and intel mac 2006/10/18
  • From: jean-marc vuissoz <vuissozjm@bluewin.ch>
• Re: [modeller_usage] modeller and intel mac 2006/10/18
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] modeller and intel mac 2006/10/19
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] how to evaluate 100 profiles? 2006/10/20
  • From: hori koshii <phorikoshii@yahoo.com>
• Re: [modeller_usage] how to evaluate 100 profiles? 2006/10/20
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] object classes-symmodel, automodel, allhmodel, etc. 2006/10/24
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] object classes-symmodel, automodel, allhmodel, etc. 2006/10/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] max_molpdf and all hydrogen models 2006/10/24
  • From: Mike White <mikewhite@drexel.edu>
• Re: [modeller_usage] max_molpdf and all hydrogen models 2006/10/24
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] What structure is better ?? 2006/10/26
  • From: cristian obiol <c.obiol@qf.ub.es>
• [modeller_usage] Picking Models 2006/10/26
  • From: hori koshii <phorikoshii@yahoo.com>
• [modeller_usage] TO PICK THE BEST LOOP 2006/10/26
  • From: bestkarollo <bestkarollo@tlen.pl>
• [modeller_usage] problem i running scrit program 2006/10/28
  • From: gadde suneetha <gaddesuneetha@yahoo.co.in>
• Re: [modeller_usage] problem i running scrit program 2006/10/28
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] errors after running the program 2006/10/29
  • From: gadde suneetha <gaddesuneetha@yahoo.co.in>
• Re: [modeller_usage] errors after running the program 2006/10/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Hole in models 2006/11/02
  • From: hori koshii <phorikoshii@yahoo.com>
• [modeller_usage] How to use model.patch_ss_templates() ? 2006/11/08
  • From: jitrayut jitonnom <jitrayut_018@hotmail.com>
• Re: [modeller_usage] How to use model.patch_ss_templates() ? 2006/11/08
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] (no subject) 2006/11/10
  • From: doppelt olivia <olivia_doppelt@yahoo.fr>
• Re: [modeller_usage] (no subject) 2006/11/11
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Incorporation of hetero atom 2006/11/13
  • From: "서주현"<seojoohyun@nate.com>
• [modeller_usage] cyclic peptide modeling 2006/11/13
  • From: Giacomo Bastianelli <gbastian@pasteur.fr>
• Re: [modeller_usage] Incorporation of hetero atom 2006/11/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] cyclic peptide modeling 2006/11/13
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Hole in models 2006/11/13
  • From: hori koshii <phorikoshii@yahoo.com>
• Re: [modeller_usage] cyclic peptide modeling 2006/11/14
  • From: Giacomo Bastianelli <gbastian@pasteur.fr>
• [modeller_usage] question 2006/11/15
  • From: "Widjaja, Linda" <Linda.Widjaja@STJUDE.ORG>
• Re: [modeller_usage] question 2006/11/15
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] cyclic peptide modeling 2006/11/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] can't bond disulfide 2006/11/16
  • From: jitrayut jitonnom <jitrayut_018@hotmail.com>
• Re: [modeller_usage] can't bond disulfide 2006/11/16
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Multi-domain protein modeling 2006/11/17
  • From: "bestkarollo" <bestkarollo@tlen.pl>
• [modeller_usage] make_chains problem 2006/11/17
  • From: "Nicolas Fusseder" <fusseder@liai.org>
• Re: [modeller_usage] make_chains problem 2006/11/17
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] _modeller.errorS 2006/11/20
  • From: Tamas Hegedus <hegedus@med.unc.edu>
• Re: [modeller_usage] _modeller.errorS 2006/11/20
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Atom index is out of range 2006/11/20
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Error in 8v2 2006/11/22
  • From: Dhananjay <dhananjay.c.joshi@gmail.com>
• Re: [modeller_usage] Error in 8v2 2006/11/22
  • From: "sako biochem" <sako.biochem@gmail.com>
• Re: [modeller_usage] Error in 8v2 2006/11/22
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Error in 8v2 2006/11/27
  • From: Dhananjay <dhananjay.c.joshi@gmail.com>
• Re: [modeller_usage] Error in 8v2 2006/11/28
  • From: Dhananjay <dhananjay.c.joshi@gmail.com>
• [modeller_usage] Psipred output in MODELLER 2006/11/29
  • From: doppelt olivia <olivia_doppelt@yahoo.fr>
• [modeller_usage] RROR: command not recognized from modeller.automodel import * 2006/11/29
  • From: gadde suneetha <gaddesuneetha@yahoo.co.in>
• Re: [modeller_usage] RROR: command not recognized from modeller.automodel import * 2006/11/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Psipred output in MODELLER 2006/11/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] Error in 8v2 2006/11/29
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Using DOPE with membrane proteins 2006/11/30
  • From: John Simms <simmsj@aston.ac.uk>
• Re: [modeller_usage] Using DOPE with membrane proteins 2006/11/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] structure not read in 2006/11/30
  • From: "Nicolas Fusseder" <fusseder@liai.org>
• Re: [modeller_usage] structure not read in 2006/11/30
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Please remove me from the mailing list, Thank you! 2006/11/30
  • From: "Omid Khalouei" <omid9dr18@hotmail.com>
• [modeller_usage] (no subject) 2006/12/04
  • From: "SaTa" <2jxckr902@sneakemail.com>
• [modeller_usage] HowTo Fix Position of Atoms? 2006/12/04
  • From: "SaTa" <2jxckr902@sneakemail.com>
• Re: [modeller_usage] HowTo Fix Position of Atoms? 2006/12/04
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] HowTo Fix Position of Atoms? 2006/12/05
  • From: "SaTa" <2jxckr902@sneakemail.com>
• [modeller_usage] wrong column range? 2006/12/05
  • From: Attila Gulyas-Kovacs <agulyaskov@mail.rockefeller.edu>
• Re: [modeller_usage] wrong column range? 2006/12/05
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] Question about DOPE 2006/12/15
  • From: "Wei Chen" <cwbluesky@gmail.com>
• Re: [modeller_usage] Question about DOPE 2006/12/15
  • From: Modeller Caretaker <modeller-care@salilab.org>
• Re: [modeller_usage] modeller_usage Digest, Vol 4, Issue 109 2006/12/22
  • From: "S.Sundar Raman" <sundar02@gmail.com>
• Re: [modeller_usage] modeller_usage Digest, Vol 4, Issue 109 2006/12/22
  • From: Modeller Caretaker <modeller-care@salilab.org>
• [modeller_usage] homodimer modelling 2006/12/25
  • From: "drugdesign" <drugdesign@yandex.ru>
• Re: [modeller_usage] homodimer modelling 2006/12/31
  • From: Modeller Caretaker <modeller-care@salilab.org>