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Re: [modeller_usage] Problem in running Modeller 8v2

Nagesh Chakka wrote:
Running the script is giving the following message. 
[nagesh@vogon ~/modelling]$ mod8v2 model_dpl_latest.top
Traceback (most recent call last):
  File "<string>", line 1, in ?
  File "/usr/lib/modeller8v2/modlib/modeller/runtop.py", line 79, in run
    self.runlines(self.lines)
  File "/usr/lib/modeller8v2/modlib/modeller/runtop.py", line 129, in
runlines
    self.set_top_vars(vars)
  File "/usr/lib/modeller8v2/modlib/modeller/runtop.py", line 256, in
set_top_vars
    raise IndexError, "Variable name not recognized: %s" % varname.upper
()
IndexError: Variable name not recognized: MODELLER.AUTOMODEL
If your script name ends in ".top", Modeller assumes that it is an old TOP script, not a Python script. See http://salilab.org/modeller/8v2/manual/node234.html 

Simply rename your script to remove the .top ending (I suggest .py).

	Ben Webb, Modeller Caretaker
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