Subject: Re: [modeller_usage] Mutiple protein templates
From: Modeller Caretaker <>
Date: Tue, 25 Apr 2006 09:30:08 -0700
Cc:
Sivaram I wrote:
I have a sequence.Its has about 300 aminoacids.The first 200 aa share
sequence homology with one protein and the rest 100 share with other
protein .Is there a way to build Homology model using the two protein
structures .If yes how do I do it?
Of course. Simply provide an alignment of all three sequences (your
target, and the two templates). Modeller will use both templates in the
modeling procedure. There is an example in the advanced tutorial at
http://salilab.org/modeller/tutorial/advanced.html