Hi,
I'm trying to model a large protein(763 amino acids) with a distant template obtained from mGenThreader...but when i run the model.py command (as shown in tutorial), i get the following:
--------------------------------------------------------------------
Type 'mod8v2' to run Modeller.
C:\Modeller>mod8v2 c:\Mitra\Project_Experiments\the_align\theAlignment.top
'import site' failed; use -v for traceback
C:\Modeller>mod8v2 c:\Mitra\Project_Experiments\the_align\model.py
'import site' failed; use -v for traceback
Traceback (most recent call last):
File "c:\Mitra\Project_Experiments\the_align\model.py", line 9, in ?
a.make()
File "C:\Modeller\modlib\modeller\automodel\automodel.py", line 100, in make
self.homcsr(exit_stage)
File "C:\Modeller\modlib\modeller\automodel\automodel.py", line 331, in homcsr
aln.check()
File "C:\Modeller\modlib\modeller\alignment.py", line 153, in check
io=io.modpt, libs=libs.modpt, **vars)
File "C:\Modeller\modlib\modeller\util\top.py", line 37, in check_alignment
return _modeller.check_alignment(aln, io, libs, *args)
_modeller.error: check_a_335E> No alignment.
C:\Modeller>
---------------------------------------------------------------------
I checked the alignment file, it seems okay to me...so i can't figure out what's going wrong. Can someone please tell me what could possibly be wrong with the alignment?
Thanks in advance
Joy
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