Re: [modeller_usage] About the Modeller output in PDB format
To:
Subject: Re: [modeller_usage] About the Modeller output in PDB format
From: Modeller Caretaker <>
Date: Sun, 21 May 2006 20:20:52 -0700
Cc:
Yun He wrote:
Hi, everybody. The structures produced by MODELLER are stored in PDB format,
what does the value in last column stand for? In a normal PDB file, there is
a temperature factor column, but in the modeller structure, it is not like a
temperature factor, what is it?
Normally in an automodel run, model.energy() is called with output='LONG
VIOLATIONS_PROFILE'. This writes out the per-residue violations of all
restraints into a .V file, and also into the temperature factor (Biso)
column of your PDB. See http://salilab.org/modeller/manual/node151.html