Modellers
I would like to make a DOPE profile for a modeled protein containing a
chemically modified side chain. I used the script suggested in the
Advanced Tutorial with the following lines to read the library files
containing information about the modified residue.
env = environ(restyp_lib_file='${LIB}/restyp_tom.lib')
env.libs.topology.read(file='$(LIB)/top_heav_tom.lib') # read topology
env.libs.parameters.read(file='$(LIB)/par_tom.lib') # read parameters
The DOPE profile is created by the script but the modified residue is left
out of the profile.
Any suggestions would be appreciated.
Tom
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Tom Burghardt
Department of Physiology and Biomedical Engineering
Mayo Clinic