Torsten Stauder wrote:
Read the alignment from file : alignment_final.ali
Total number of alignment positions: 426
# Code #_Res #_Segm PDB_code Name
-------------------------------------------------------------------------------
1 a627 426 1 a627 FLT3 mutated ITD
2 1rjb 344 1 1rjb FLT3 wild type
runcmd______> alignment.check()
check_a_343_> >> BEGINNING OF COMMAND
check_a_337E> Structure not read in (please consult the log file
for more details): 1 a627
That's odd - there should be a more descriptive error message in the log file. If you can send me your input files (alignment_final.ali, and the PDB file you're using for a627) then I can take a look.
Another question: Do I have to provide my sequence to be modelled a .pdb-file using "0.00" as coordinates or is it sufficient to provide it as .fasta?
You only need the sequence, in a PIR file.
Ben Webb, Modeller Caretaker
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