Re: [modeller_usage] I don't know how to get the file pdb_95.pir in my case, plz, tell me what to do.

[Modeller Caretaker <>]

Ngo Duc Tri wrote:
> I'm newbie in Modeller so I practice the Tutorial (Basic Example 1).
> It's ok but when I model my protein, I don't know how we can obtain
> the file pdb_95.pir which contains sequences that are 95% identity to
> my protein? Which program or which command will I need to do? Can
> anyone help me? Thank you very much.

The file pdb_95.pir is in the basic-example.zip file, which is available 
to download at the top of the 'basic example' tutorial web page. But it 
does not contain sequences that are 95% identical to your protein. It 
contains sequences for all structures in the PDB, filtered to remove 
redundancies (no sequence in that file is more than 95% identical to any 
other sequence in the file). This is all described in the instructions 
for step 1 of the basic tutorial.

	Ben Webb, Modeller Caretaker
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