Re: [modeller_usage] errors after running the program

[Modeller Caretaker <>]

gadde suneetha wrote:
> the following messages are displayed.
>
> 1)file build_profile.py line 6 in?
> seq_database_format='PIR',
>          chains_list='ALL', minmax_db_seq_len=(30,
> 4000), clean_sequences=True)
>
> 2) file
> c:\programfiles\modeller8v2\modlib\modeller\util\top.py
> line 29 in read.
> libs=libs.modpt , **vars
>
> 3)file
> c:\programfiles\modeller8v2\modlib\modeller\util\top.py
> line 353 line in read_sequence_db 
> return modeller.read_sequence_db(sdb,libs,*args)
>
> 4) IO error openf 670E)cannot open file pdb_95.PIR  no
> such file or directory 
>  
>  1,2,3----are these errors or warnings.

That's part of the Python traceback, which shows you where the error 
occurred. I don't know why you split into into 4 sections like this, 
because it's all one error message. The last line is probably the most 
informative: like it says, it can't find the file pdb_95.PIR.

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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