Re: [modeller_usage] can't bond disulfide

[Modeller Caretaker <>]

jitrayut jitonnom wrote:
>     I want to bond two disulfides (residue 20 and residue 66, res 105
>     and res 164) by using script below. But i did not bond any
>     disulfides so why ?
...
>     a = automodel(env, alnfile='CD147-mult.ali',
>                   knowns=('1F97A','1NBQA','1EPFB'), sequence='CD147')

This line should start as
a = mymodel(env, ...
rather than
a = automodel(env, ...
so that you use the newly-defined 'mymodel' class, with the disulfide 
restraints.

	Ben Webb, Modeller Caretaker
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