drugdesign wrote:
I need to model a homodimer from a homodimer templare. How my alignment file must look like? I mean I have problems with aminoacids numbers and chain names. How to solve this problems? I've attached all input files. Do I need to rename and renumber sequence or I can complete the task without it?
Your alignment is fine - all you need to do is add the starting and ending residue numbers and chain IDs, i.e. change the existing header: >P1;mfzd structureX:mfzd:::::undefined:undefined:1.35:0.225 to >P1;mfzd structureX:mfzd:5:A:126:B:undefined:undefined:1.35:0.225 Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage