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[modeller_usage] forrtl Error using the "/." construct

Dear all,

I am trying to model a protein with a ligand using the "/." construct in the alignment and I am getting the following error:

[ralf@localhost models]$ mod8v2 tens1.top
forrtl: severe (64): input conversion error, unit -5, file Internal Formatted Read
Image              PC        Routine            Line        Source
mod8v2_i386-intel  0837011A  Unknown               Unknown  Unknown
mod8v2_i386-intel  0836E555  Unknown               Unknown  Unknown
mod8v2_i386-intel  0834064D  Unknown               Unknown  Unknown
...
mod8v2_i386-intel  080811C6  Unknown               Unknown  Unknown
mod8v2_i386-intel  08080D81  Unknown               Unknown  Unknown
libc.so.6          006F179A  Unknown               Unknown  Unknown
mod8v2_i386-intel  08080CC1  Unknown               Unknown  Unknown
[ralf@localhost models]$


[ralf@localhost models]$ tail -20 tens1.log
read_al_374_> Non-standard residue type,position,sequence:  .      324        1
read_al_374_> Non-standard residue type,position,sequence:  .      324        2
 
Read the alignment from file       : tens1.ali
Total number of alignment positions:   324
 
  #  Code        #_Res #_Segm PDB_code    Name
-------------------------------------------------------------------------------
  1       1d5r     308      2        1d5r .
  2    tensin1     309      2     tensin1 .
TOP_________>   129  113 STRING_IF STRING_ARGUMENTS = TOP_VERSION 'accelrys', OPER;
                      ATION = 'EQ'
 
TOP_________>   130  117 CHECK_ALIGNMENT
 
check_a_343_> >> BEGINNING OF COMMAND
openf5__224_> Open       11  OLD  SEQUENTIAL  1d5r.pdb
 
Dynamically allocated memory at   amaxstructure [B,kB,MB]:      2652691    2590.519     2.530
openf5__224_> Open       11  OLD  SEQUENTIAL  1d5r.pdb
[ralf@localhost models]$


I should mention that the modelling process without ligand runs smoothly. I am using Modeller 8v2 on Linux RHE, 2.4.21-47.0.1.ELsmp kernel.


Thanks in advance for any hints,

Ralf

Attachment: forrtl.tar.gz
Description: forrtl.tar.gz