Modeller_Usage Mailing List (by date)

Thread Index

[modeller_usage] Problems about disulfide bonds 2007/01/03
- From: 饶? <>
Re: [modeller_usage] Problems about disulfide bonds 2007/01/03
- From: Modeller Caretaker <>
[modeller_usage] modeller model and modbase model 2007/01/07
- From: hori koshii <>
Re: [modeller_usage] modeller model and modbase model 2007/01/07
- From: Eswar Narayanan <>
[modeller_usage] Ligands 2007/01/08
- From: Joel Tyndall <>
Re: [modeller_usage] Ligands 2007/01/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Ligands 2007/01/09
- From: Esben Jannik Bjerrum <>
[modeller_usage] origin of blosum62.sim.mat and as1.sim.mat 2007/01/11
- From: "Joshua A. Speidel" <>
Re: [modeller_usage] origin of blosum62.sim.mat and as1.sim.mat 2007/01/11
- From: Modeller Caretaker <>
[modeller_usage] Cómo instalar MODELLER 2007/01/11
- From: Carlos Lozano <>
[modeller_usage] forrtl Error using the "/." construct 2007/01/12
- From: "Schmid, Dr R." <>
Re: [modeller_usage] forrtl Error using the "/." construct 2007/01/12
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2007/01/19
- From:
[modeller_usage] help about evaluate_model.log 2007/01/19
- From:
Re: [modeller_usage] help about evaluate_model.log 2007/01/19
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9v1 release 2007/01/22
- From: Modeller Caretaker <>
[modeller_usage] using restraints from saxs data 2007/01/24
- From: Christian Meesters <>
[modeller_usage] Model evaluation question - DOPE 2007/01/24
- From: "Charlie Allerston" <>
Re: [modeller_usage] using restraints from saxs data 2007/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Model evaluation question - DOPE 2007/01/24
- From: Modeller Caretaker <>
[modeller_usage] loop modeling 2007/01/25
- From: Mehdi Bagheri-Hamaneh <>
Re: [modeller_usage] loop modeling 2007/01/25
- From: Modeller Caretaker <>
[modeller_usage] Question 2007/01/25
- From: Manuel Aguilar <>
[modeller_usage] I am having problems to install the MODELLER 2007/01/26
- From:
Re: [modeller_usage] I am having problems to install the MODELLER 2007/01/26
- From: Modeller Caretaker <>
Re: [modeller_usage] Question 2007/01/26
- From: Modeller Caretaker <>
[modeller_usage] Disulfides 2007/01/31
- From: Joel Tyndall <>
Re: [modeller_usage] D-Proline problem 2007/02/01
- From: "N.Arun Prasanna" <>
[modeller_usage] using different weights for spatial restraints 2007/02/01
- From: Lillian Chong <ltchong+@pitt.edu>
[modeller_usage] modeling a 2 domain protein with interdomain restraints 2007/02/02
- From: Michel Seigneuret <>
Re: [modeller_usage] modeling a 2 domain protein with interdomain restraints 2007/02/02
- From: Modeller Caretaker <>
Re: [modeller_usage] D-Proline problem 2007/02/02
- From: Modeller Caretaker <>
Re: [modeller_usage] using different weights for spatial restraints 2007/02/02
- From: Modeller Caretaker <>
Re: [modeller_usage] Disulfides 2007/02/05
- From: Modeller Caretaker <>
[modeller_usage] Making bond between residue and BLK residue 2007/02/05
- From: "서주현"<>
Re: [modeller_usage] Making bond between residue and BLK residue 2007/02/06
- From: Modeller Caretaker <>
[modeller_usage] complete_pdb 2007/02/06
- From: Tamas Hegedus <>
Re: [modeller_usage] complete_pdb 2007/02/06
- From: Modeller Caretaker <>
[modeller_usage] orientation of domains in chimera 2007/02/16
- From: "Lillian chong" <>
Re: [modeller_usage] orientation of domains in chimera 2007/02/16
- From: Modeller Caretaker <>
[modeller_usage] clustering 2007/02/20
- From: Miriam Leach <>
Re: [modeller_usage] clustering 2007/02/20
- From: Modeller Caretaker <>
[modeller_usage] Specify Angle Restraint 2007/02/21
- From: "Brandon Mills" <>
[modeller_usage] RMSD 2007/02/22
- From: Mathew Smith <>
Re: [modeller_usage] RMSD 2007/02/22
- From: Modeller Caretaker <>
Re: [modeller_usage] Specify Angle Restraint 2007/02/22
- From: Modeller Caretaker <>
[modeller_usage] arranging individual subunits 2007/02/23
- From: "adak nasiripour" <>
[modeller_usage] modelling of sequence without structural template. 2007/03/01
- From: "Archana Chavan" <>
Re: [modeller_usage] modelling of sequence without structural template. 2007/03/03
- From: Modeller Caretaker <>
[modeller_usage] help with modelling protein-DNA complex 2007/03/05
- From: Elliott Stollar <>
Re: [modeller_usage] help with modelling protein-DNA complex 2007/03/05
- From: Modeller Caretaker <>
[modeller_usage] modelling a protein-receptor complex 2007/03/07
- From: Eva Vanamee <>
Re: [modeller_usage] modelling a protein-receptor complex 2007/03/07
- From: Modeller Caretaker <>
[modeller_usage] Creating a dimer using model generated by modeller 2007/03/08
- From: "Charlie Allerston" <>
[modeller_usage] changes in MODELLER9 optimization & DNA denaturation 2007/03/08
- From: RYAN PAVLOVICZ <>
Re: [modeller_usage] changes in MODELLER9 optimization & DNA denaturation 2007/03/08
- From: Modeller Caretaker <>
[modeller_usage] Errors during generate alignment file for two chains 2007/03/09
- From: jitrayut jitonnom <>
Re: [modeller_usage] Errors during generate alignment file for two chains 2007/03/09
- From: Modeller Caretaker <>
[modeller_usage] secondary structure assignment and patching 2007/03/09
- From: Ryan <>
[modeller_usage] query 2007/03/09
- From: "deepti " <>
[modeller_usage] How can modeller build the structure of antibodies ? 2007/03/12
- From: jitrayut jitonnom <>
Re: [modeller_usage] How can modeller build the structure of antibodies ? 2007/03/12
- From: Modeller Caretaker <>
Re: [modeller_usage] How can modeller build the structure of antibodies ? 2007/03/13
- From: jitrayut jitonnom <>
[modeller_usage] How to incorporate NAD and water in my model 2007/03/14
- From: "deepti " <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/14
- From: "Charlie Allerston" <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/14
- From: Modeller Caretaker <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/14
- From: Joel Tyndall <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/15
- From: "Charlie Allerston" <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/15
- From: Modeller Caretaker <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/15
- From: "Charlie Allerston" <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/15
- From: "Schmid, Dr R." <>
Re: [modeller_usage] How to incorporate NAD and water in my model 2007/03/16
- From: Modeller Caretaker <>
[modeller_usage] how to select the best template? 2007/03/19
- From: "deepti " <>
[modeller_usage] how to select the best template? 2007/03/19
- From: "deepti " <>
[modeller_usage] HYP and alignment from other than modeller 2007/03/21
- From: yuemin liu <>
Re: [modeller_usage] HYP and alignment from other than modeller 2007/03/21
- From: Modeller Caretaker <>
Re: [modeller_usage] secondary structure assignment and patching 2007/03/22
- From: Modeller Caretaker <>
Re: [modeller_usage] changes in MODELLER9 optimization & DNA denaturation 2007/03/22
- From: Modeller Caretaker <>
[modeller_usage] alignment of multiple templates 2007/03/24
- From: Bo Yang <>
Re: [modeller_usage] alignment of multiple templates 2007/03/24
- From: Modeller Caretaker <>
Re: [modeller_usage] alignment of multiple templates 2007/03/25
- From: Bo Yang <>
Re: [modeller_usage] alignment of multiple templates 2007/03/25
- From: Modeller Caretaker <>
[modeller_usage] [Fwd: modeling crosslinked homodimeric protein] 2007/03/25
- From: Modeller Caretaker <>
Re: [modeller_usage] alignment of multiple templates 2007/03/26
- From: Bo Yang <>
Re: [modeller_usage] alignment of multiple templates 2007/03/26
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: modeling crosslinked homodimeric protein] 2007/03/26
- From: Modeller Caretaker <>
[modeller_usage] Quesion about patch the Terminal residues 2007/03/27
- From: "zhou jinming" <>
Re: [modeller_usage] Quesion about patch the Terminal residues 2007/03/27
- From: Modeller Caretaker <>
[modeller_usage] Targeting Restraints for Weakening 2007/03/28
- From: "Brandon Mills" <>
Re: [modeller_usage] Targeting Restraints for Weakening 2007/03/29
- From: Modeller Caretaker <>
[modeller_usage] [Fwd: molecular dynamics simulations in modeller] 2007/03/29
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: molecular dynamics simulations in modeller] 2007/03/29
- From: Modeller Caretaker <>
[modeller_usage] model ligand 2007/03/31
- From: Bo Yang <>
Re: [modeller_usage] model ligand 2007/03/31
- From: Modeller Caretaker <>
Re: [modeller_usage] model ligand 2007/03/31
- From: Bo Yang <>
Re: [modeller_usage] model ligand 2007/03/31
- From: Modeller Caretaker <>
[modeller_usage] Modeling multiple chains with two ligands 2007/04/08
- From: "Dimitry.A.Suplatov" <>
Re: [modeller_usage] Modeling multiple chains with two ligands 2007/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 6, Issue 29 2007/04/08
- From: "Dimitry.A.Suplatov" <>
[modeller_usage] User defined restraints 2007/04/08
- From: "Dimitry.A.Suplatov" <>
Re: [modeller_usage] User defined restraints 2007/04/09
- From: Modeller Caretaker <>
[modeller_usage] Rigid ligand 2007/04/10
- From: "dimitry.a.suplatov" <>
Re: [modeller_usage] Rigid ligand 2007/04/10
- From: Modeller Caretaker <>
[modeller_usage] Add rigid bodies and CA-CA restraints 2007/04/10
- From: Gregoire Depret <>
Re: [modeller_usage] Add rigid bodies and CA-CA restraints 2007/04/10
- From: Modeller Caretaker <>
[modeller_usage] Psi and Phi Dihedral Restraints 2007/04/16
- From: "Brandon Mills" <>
Re: [modeller_usage] Psi and Phi Dihedral Restraints 2007/04/16
- From: Modeller Caretaker <>
[modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: "" <>
Re: [modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: "Charlie Allerston" <>
Re: [modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: "" <>
Re: [modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: "Pankaj R. Daga" <>
Re: [modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: "Pankaj R. Daga" <>
[modeller_usage] using model-addrsr in modeller9v1 2007/04/17
- From: "" <>
Re: [modeller_usage] using model-loop-refine in Modeller9v1 2007/04/17
- From: Modeller Caretaker <>
Re: [modeller_usage] using model-addrsr in modeller9v1 2007/04/17
- From: Modeller Caretaker <>
[modeller_usage] Rigid bodies on the backbone only. 2007/04/18
- From: Gregoire Depret <>
[modeller_usage] stuck even before begining - how to create the .ali file 2007/04/18
- From: "Ariel Bensimon" <>
Re: [modeller_usage] stuck even before begining - how to create the .ali file 2007/04/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Rigid bodies on the backbone only. 2007/04/18
- From: Modeller Caretaker <>
[modeller_usage] using multiple template in Modeller9v1 2007/04/19
- From: "" <>
Re: [modeller_usage] using multiple template in Modeller9v1 2007/04/19
- From: Modeller Caretaker <>
[modeller_usage] Unpick restraints and partial optimization. 2007/04/26
- From: Gregoire Depret <>
Re: [modeller_usage] Unpick restraints and partial optimization. 2007/04/26
- From: Modeller Caretaker <>
[modeller_usage] CONECT record in MODELLER? 2007/05/03
- From: "Ngo Duc Tri" <>
Re: [modeller_usage] CONECT record in MODELLER? 2007/05/03
- From: Modeller Caretaker <>
[modeller_usage] Ubuntu installation issue 2007/05/07
- From: Christian Meesters <>
Re: [modeller_usage] Ubuntu installation issue 2007/05/07
- From: Modeller Caretaker <>
[modeller_usage] [Fwd: Cannot generate the plot of DOPE?] 2007/05/08
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: Cannot generate the plot of DOPE?] 2007/05/08
- From: Modeller Caretaker <>
[modeller_usage] getting pdb's but not fit.pdb's 2007/05/08
- From:
[modeller_usage] Modeller as webservice (WSDL) 2007/05/09
- From: "Francoijs, Kees-Jan" <>
Re: [modeller_usage] Modeller as webservice (WSDL) 2007/05/09
- From: "Wilfred Li" <>
Re: [modeller_usage] getting pdb's but not fit.pdb's 2007/05/09
- From: Modeller Caretaker <>
[modeller_usage] query 2007/05/10
- From: "ajeeta kaushiki" <>
[modeller_usage] query about chimeric protein 2007/05/11
- From: "Sana Bilal" <>
[modeller_usage] problems modeling a multimer 2007/05/12
- From: Douglas Kojetin <>
[modeller_usage] loop to connect two domain 2007/05/14
- From: "Jayapal, Prabha" <>
[modeller_usage] Optimizing the Helix strain in the model? 2007/05/14
- From: "Ngo Duc Tri" <>
Re: [modeller_usage] query 2007/05/15
- From: Modeller Caretaker <>
Re: [modeller_usage] query about chimeric protein 2007/05/15
- From: Modeller Caretaker <>
Re: [modeller_usage] problems modeling a multimer 2007/05/15
- From: Modeller Caretaker <>
Re: [modeller_usage] Ubuntu installation issue 2007/05/15
- From: Modeller Caretaker <>
[modeller_usage] Making many result model 2007/05/16
- From: "서주현"<>
[modeller_usage] use bovin rhodopsin as template 2007/05/16
- From: "" <>
Re: [modeller_usage] Making many result model 2007/05/16
- From: Modeller Caretaker <>
Re: [modeller_usage] use bovin rhodopsin as template 2007/05/16
- From: Modeller Caretaker <>
[modeller_usage] model transmenbrane regions 2007/05/16
- From: "" <>
[modeller_usage] disulfide 2007/05/17
- From: "Lixia Jin" <>
Re: [modeller_usage] disulfide 2007/05/17
- From: Modeller Caretaker <>
[modeller_usage] Including disulfide bonds 2007/05/23
- From: Atila Iamarino <>
Re: [modeller_usage] Including disulfide bonds 2007/05/23
- From: Modeller Caretaker <>
[modeller_usage] ImportError: No module named automodel... 2007/05/30
- From: matteo <>
Re: [modeller_usage] ImportError: No module named automodel... 2007/05/30
- From: Modeller Caretaker <>
[modeller_usage] define residues 2007/05/30
- From: "Lixia Jin" <>
Re: [modeller_usage] define residues 2007/05/30
- From: Modeller Caretaker <>
[modeller_usage] residue selection 2007/05/30
- From: "Lixia Jin" <>
Re: [modeller_usage] residue selection 2007/05/30
- From: Modeller Caretaker <>
[modeller_usage] to build a structure from CA coordinate 2007/05/31
- From: "Lixia Jin" <>
[modeller_usage] difficult modelling example 2007/05/31
- From: James Fethiere <>
Re: [modeller_usage] to build a structure from CA coordinate 2007/05/31
- From: Modeller Caretaker <>
Re: [modeller_usage] difficult modelling example 2007/05/31
- From: Modeller Caretaker <>
[modeller_usage] Model with ligand from template 2007/05/31
- From: hori koshii <>
Re: [modeller_usage] Model with ligand from template 2007/05/31
- From: Modeller Caretaker <>
[modeller_usage] a question about add hidrogen 2007/06/01
- From: Atila Iamarino <>
Re: [modeller_usage] a question about add hidrogen 2007/06/01
- From: Modeller Caretaker <>
[modeller_usage] help--model-segment.py 2007/06/03
- From: "" <>
Re: [modeller_usage] help--model-segment.py 2007/06/03
- From: Modeller Caretaker <>
[modeller_usage] help--model-segment.py 2007/06/04
- From: "" <>
Re: [modeller_usage] help--model-segment.py 2007/06/04
- From: Modeller Caretaker <>
[modeller_usage] model-multiple.py error 2007/06/04
- From: Eeson Rajendra <>
Re: [modeller_usage] model-multiple.py error 2007/06/04
- From: Modeller Caretaker <>
Re: [modeller_usage] model-multiple.py error 2007/06/05
- From: Eeson Rajendra <>
Re: [modeller_usage] model-multiple.py error 2007/06/05
- From: Modeller Caretaker <>
[modeller_usage] modweb 2007/06/05
- From: James Fethiere <>
[modeller_usage] help--model-segment.py 2007/06/06
- From: "" <>
Re: [modeller_usage] help--model-segment.py 2007/06/06
- From: Modeller Caretaker <>
[modeller_usage] h-bonds with loop models 2007/06/06
- From: David Gell <>
[modeller_usage] build_profile.py help 2007/06/08
- From: Eeson Rajendra <>
[modeller_usage] model.energy() 2007/06/11
- From: "Jayapal, Prabha" <>
[modeller_usage] homology problem 2007/06/14
- From: "Fabian Glaser" <>
[modeller_usage] How to bend a helix? 2007/06/15
- From: "Nadine Töpfer" <>
[modeller_usage] what should PYTHONPATH and LD_LIBRARY_PATH be set to? 2007/06/15
- From: "David Mobley" <>
[modeller_usage] modelling a chimera from structureM-type templates 2007/06/18
- From: "Cahya Prihatna" <>
[modeller_usage] set alpha-helix and SS bond 2007/06/18
- From: Aline <>
[modeller_usage] Loop Modelling 2007/06/25
- From: "Michael Paterson" <>
[modeller_usage] Alignment problem 2007/06/26
- From: Monika Sharma <>
[modeller_usage] Sequence alignment softwares 2007/06/26
- From: "DPF Chocolate" <>
Re: [modeller_usage] model.energy() 2007/06/27
- From: Modeller Caretaker <>
Re: [modeller_usage] build_profile.py help 2007/06/27
- From: Modeller Caretaker <>
Re: [modeller_usage] modelling a chimera from structureM-type templates 2007/06/27
- From: Modeller Caretaker <>
Re: [modeller_usage] what should PYTHONPATH and LD_LIBRARY_PATH be set to? 2007/06/27
- From: Modeller Caretaker <>
[modeller_usage] setting restyp, top_heav and par libs 2007/06/28
- From: David Marshall <>
[modeller_usage] Help with transfer_xyz method 2007/06/29
- From: Ali Algarrous <>
Re: [modeller_usage] Help with transfer_xyz method 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] setting restyp, top_heav and par libs 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] h-bonds with loop models 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] set alpha-helix and SS bond 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop Modelling 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] Alignment problem 2007/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] Help with transfer_xyz method 2007/07/02
- From: Ali Algarrous <>
Re: [modeller_usage] Help with transfer_xyz method 2007/07/02
- From: Modeller Caretaker <>
[modeller_usage] ternary complex in modweb 2007/07/02
- From: James Fethiere <>
[modeller_usage] Same values for the models 2007/07/03
- From: Atila Iamarino <>
Re: [modeller_usage] Same values for the models 2007/07/03
- From: Modeller Caretaker <>
Re: [modeller_usage] ternary complex in modweb 2007/07/03
- From: Modeller Caretaker <>
Re: [modeller_usage] How to bend a helix? 2007/07/03
- From: Modeller Caretaker <>
[modeller_usage] same values for the models 2 2007/07/03
- From: Atila Iamarino <>
Re: [modeller_usage] same values for the models 2 2007/07/03
- From: Modeller Caretaker <>
[modeller_usage] pdb95.fsa 2007/07/05
- From: Bo Yang <>
[modeller_usage] How to optimize a model 2007/07/06
- From: Atila Iamarino <>
Re: [modeller_usage] pdb95.fsa 2007/07/06
- From: Modeller Caretaker <>
Re: [modeller_usage] How to optimize a model 2007/07/06
- From: Modeller Caretaker <>
[modeller_usage] modeller 9.2: spaghetti effect with multiple templates 2007/07/10
- From: Raik Gruenberg <>
Re: [modeller_usage] modeller 9.2: spaghetti effect with multiple templates 2007/07/10
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller 9.2: spaghetti effect with multipletemplates 2007/07/11
- From: Raik Gruenberg <>
Re: [modeller_usage] modeller 9.2: spaghetti effect with multipletemplates 2007/07/11
- From: Modeller Caretaker <>
[modeller_usage] disulphide 2007/07/17
- From: "Thijs Beuming" <>
Re: [modeller_usage] disulphide 2007/07/17
- From: Modeller Caretaker <>
[modeller_usage] DOPE score question 2007/07/17
- From: hori koshii <>
Re: [modeller_usage] DOPE score question 2007/07/17
- From: Modeller Caretaker <>
[modeller_usage] trouble modeling ligand 2007/07/18
- From: Starr Hazard <>
Re: [modeller_usage] trouble modeling ligand 2007/07/18
- From: Modeller Caretaker <>
[modeller_usage] Block Ligand stereo chemistry problem 2007/07/26
- From: "Andre Fischer" <>
Re: [modeller_usage] Block Ligand stereo chemistry problem 2007/07/26
- From: Modeller Caretaker <>
[modeller_usage] making a patch work 2007/07/27
- From: Starr Hazard <>
Re: [modeller_usage] making a patch work 2007/07/27
- From: Modeller Caretaker <>
[modeller_usage] Question about a protein structure 2007/07/30
- From: "Ester Fusté Domínguez" <>
Re: [modeller_usage] Question about a protein structure 2007/07/30
- From: Modeller Caretaker <>
[modeller_usage] regarding simulated annealing 2007/08/01
- From: vidhya sankar <>
Re: [modeller_usage] regarding simulated annealing 2007/08/01
- From: Modeller Caretaker <>
[modeller_usage] [Fwd: five ss bridges] 2007/08/02
- From: Modeller Caretaker <>
[modeller_usage] The models miss the 40 first aa of the sequence 2007/08/02
- From: "Dany Naranjo Feliciano" <>
[modeller_usage] five ss bridges 2007/08/02
- From: "Dany Naranjo Feliciano" <>
Re: [modeller_usage] five ss bridges 2007/08/02
- From: Modeller Caretaker <>
Re: [modeller_usage] The models miss the 40 first aa of the sequence 2007/08/02
- From: Modeller Caretaker <>
[modeller_usage] [Fwd: Re: The models miss the 40 first aa of the sequence] 2007/08/02
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: Re: The models miss the 40 first aa of the sequence] 2007/08/03
- From: Modeller Caretaker <>
[modeller_usage] Could you please remove my e-mail from your list? Thank you 2007/08/03
- From: "Omid Khalouei" <>
[modeller_usage] total of DOPE per residues not equal to global DOPE? 2007/08/04
- From: hori koshii <>
Re: [modeller_usage] total of DOPE per residues not equal to global DOPE? 2007/08/06
- From: Modeller Caretaker <>
[modeller_usage] automated response 2007/08/06
- From: "charloteaux.b" <>
[modeller_usage] modelling tetramer by using multiple templates 2007/08/07
- From: EP <>
Re: [modeller_usage] modelling tetramer by using multiple templates 2007/08/07
- From: Modeller Caretaker <>
[modeller_usage] Global DOPE vs. local profile 2007/08/07
- From: hori koshii <>
Re: [modeller_usage] loop refinement 2007/08/07
- From: "Agnieszka Szarecka" <>
Re: [modeller_usage] loop refinement 2007/08/07
- From: Mensur Dlakic <>
Re: [modeller_usage] Global DOPE vs. local profile 2007/08/08
- From: Modeller Caretaker <>
Re: [modeller_usage] loop refinement 2007/08/08
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9v2 release 2007/08/08
- From: Modeller Caretaker <>
[modeller_usage] Error Messages 2007/08/08
- From: "Michael Paterson" <>
Re: [modeller_usage] Error Messages 2007/08/08
- From: Modeller Caretaker <>
[modeller_usage] code and logic question 2007/08/09
- From: Christian Meesters <>
[modeller_usage] DOPE 2007/08/09
- From: "Ester Fusté Domínguez" <>
Re: [modeller_usage] code and logic question 2007/08/09
- From: Modeller Caretaker <>
Re: [modeller_usage] DOPE 2007/08/09
- From: Modeller Caretaker <>
[modeller_usage] regarding DOPE score 2007/08/10
- From: vidhya sankar <>
[modeller_usage] regrding superpose.py 2007/08/10
- From: vidhya sankar <>
[modeller_usage] ref: SUPERPOSE.PY 2007/08/10
- From: vidhya sankar <>
Re: [modeller_usage] regarding DOPE score 2007/08/10
- From: Modeller Caretaker <>
Re: [modeller_usage] regrding superpose.py 2007/08/10
- From: Modeller Caretaker <>
Re: [modeller_usage] making a patch work 2007/08/10
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller 9.2: spaghetti effect with multiple templates 2007/08/10
- From: Modeller Caretaker <>
Re: [modeller_usage] SA IN optimize.py 2007/08/11
- From: vidhya sankar <>
Re: [modeller_usage] log files 2007/08/11
- From: vidhya sankar <>
Re: [modeller_usage] SA IN optimize.py 2007/08/11
- From: Modeller Caretaker <>
Re: [modeller_usage] log files 2007/08/11
- From: Modeller Caretaker <>
Re: [modeller_usage] dope calculations 2007/08/13
- From: vidhya sankar <>
Re: [modeller_usage] superpose.py 2007/08/16
- From: vidhya sankar <>
[modeller_usage] Reg. Generating profile plot using GNUPLOt 2007/08/16
- From: saravanan <>
[modeller_usage] restraints from multiple templates 2007/08/16
- From: Mathew Smith <>
Re: [modeller_usage] Reg. Generating profile plot using GNUPLOt 2007/08/16
- From: Modeller Caretaker <>
Re: [modeller_usage] restraints from multiple templates 2007/08/16
- From: Modeller Caretaker <>
[modeller_usage] loop optimization in the presence of a ligand 2007/08/16
- From: "Thijs Beuming" <>
Re: [modeller_usage] loop optimization in the presence of a ligand 2007/08/16
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 6, Issue 79 2007/08/17
- From: vidhya sankar <>
Re: [modeller_usage] warning rectifications 2007/08/20
- From: vidhya sankar <>
[modeller_usage] Regarding violations profile 2007/08/20
- From: harpreet singh <>
Re: [modeller_usage] warning rectifications 2007/08/20
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding violations profile 2007/08/20
- From: Modeller Caretaker <>
[modeller_usage] help--orient multiple template 2007/08/21
- From: "" <>
Re: [modeller_usage] help--orient multiple template 2007/08/21
- From: Modeller Caretaker <>
[modeller_usage] align sequences 2007/08/21
- From:
Re: [modeller_usage] align sequences 2007/08/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Secondary Structure Restraints 2007/08/21
- From: Modeller Caretaker <>
[modeller_usage] help--model_ini.py 2007/08/21
- From: "" <>
[modeller_usage] Reg. comparing dope profile or both template and model 2007/08/21
- From: saravanan <>
Re: [modeller_usage] help--model_ini.py 2007/08/22
- From: Modeller Caretaker <>
Re: [modeller_usage] Reg. comparing dope profile or both template and model 2007/08/22
- From: Modeller Caretaker <>
Re: [modeller_usage] Reg. comparing dope profile or both template and model 2007/08/22
- From: saravanan <>
[modeller_usage] help--model_ini.py 2007/08/22
- From: "" <>
[modeller_usage] applying symmetry 2007/08/23
- From: Christian Meesters <>
[modeller_usage] Reg. align_codes error in profile_build.py in Mod9v2 2007/08/23
- From: saravanan <>
Re: [modeller_usage] Reg. align_codes error in profile_build.py in Mod9v2 2007/08/23
- From: Modeller Caretaker <>
Re: [modeller_usage] help--model_ini.py 2007/08/23
- From: Modeller Caretaker <>
Re: [modeller_usage] applying symmetry 2007/08/23
- From: Modeller Caretaker <>
[modeller_usage] ligand modeling in binding site 2007/08/23
- From: mahendra awale <>
Re: [modeller_usage] ligand modeling in binding site 2007/08/23
- From: Modeller Caretaker <>
[modeller_usage] ligand modeling in binding site of protein 2007/08/23
- From: mahendra awale <>
Re: [modeller_usage] ligand modeling in binding site of protein 2007/08/24
- From: Modeller Caretaker <>
[modeller_usage] ligand modeling in binding site of protein 2007/08/24
- From: mahendra awale <>
Re: [modeller_usage] ligand modeling in binding site of protein 2007/08/24
- From: Modeller Caretaker <>
[modeller_usage] Modeling a sequence based on a low identity to a template 2007/08/26
- From: ESTER FUSTE DOMINGUEZ <>
[modeller_usage] ERROR MESSAGE 2007/08/26
- From: ESTER FUSTE DOMINGUEZ <>
Re: [modeller_usage] Modeling a sequence based on a low identity to a template 2007/08/26
- From: Modeller Caretaker <>
[modeller_usage] Problem when reconstruct the protein with know structure! 2007/08/27
- From: "liu xin" <>
[modeller_usage] Problem when reconstruct the protein with know structure! 2007/08/27
- From: "liu xin" <>
[modeller_usage] multiple-template no overlap 2007/08/27
- From: "" <>
Re: [modeller_usage] Problem when reconstruct the protein with know structure! 2007/08/28
- From: Modeller Caretaker <>
Re: [modeller_usage] multiple-template no overlap 2007/08/28
- From: Modeller Caretaker <>
[modeller_usage] platform (in)dependent libraries? 2007/08/28
- From: Mike White <>
Re: [modeller_usage] platform (in)dependent libraries? 2007/08/28
- From: Modeller Caretaker <>
[modeller_usage] Loop refinement 2007/08/30
- From: ESTER FUSTE DOMINGUEZ <>
Re: [modeller_usage] Loop refinement 2007/08/30
- From: Modeller Caretaker <>
[modeller_usage] structural docking 2007/09/04
- From:
Re: [modeller_usage] structural docking 2007/09/04
- From: Modeller Caretaker <>
Re: [modeller_usage] structural docking 2007/09/04
- From: Mensur Dlakic <>
[modeller_usage] setting distance restraints 2007/09/05
- From: Mike White <>
Re: [modeller_usage] setting distance restraints 2007/09/05
- From: Modeller Caretaker <>
[modeller_usage] Modelling complexes 2007/09/06
- From:
Re: [modeller_usage] Modelling complexes 2007/09/06
- From: Modeller Caretaker <>
[modeller_usage] modeller.top location? 2007/09/07
- From: DANIEL TAYLOR <>
Re: [modeller_usage] modeller.top location? 2007/09/07
- From: Modeller Caretaker <>
[modeller_usage] Model quality assessment 2007/09/10
- From:
[modeller_usage] Special Considerations in Membrane-bound models? 2007/09/10
- From: "Andrew D. Fant" <>
Re: [modeller_usage] Model quality assessment 2007/09/10
- From: Modeller Caretaker <>
Re: [modeller_usage] Special Considerations in Membrane-bound models? 2007/09/10
- From: Modeller Caretaker <>
[modeller_usage] align_codes error 2007/09/10
- From: Dave Roe <>
Re: [modeller_usage] align_codes error 2007/09/10
- From: Modeller Caretaker <>
[modeller_usage] dope_loopmodel question 2007/09/10
- From: Mike White <>
Re: [modeller_usage] dope_loopmodel question 2007/09/10
- From: Modeller Caretaker <>
[modeller_usage] Cu(I) Parameters 2007/09/11
- From:
[modeller_usage] using DOPE assessment 2007/09/11
- From:
Re: [modeller_usage] Cu(I) Parameters 2007/09/11
- From: Modeller Caretaker <>
Re: [modeller_usage] using DOPE assessment 2007/09/11
- From: Modeller Caretaker <>
[modeller_usage] selection to model 2007/09/13
- From: "Alex Brown" <>
Re: [modeller_usage] selection to model 2007/09/13
- From: Modeller Caretaker <>
[modeller_usage] model_comparison 2007/09/15
- From: Prasenjit Mukherjee <>
Re: [modeller_usage] model_comparison 2007/09/17
- From: Modeller Caretaker <>
Re: [modeller_usage] September 70% OFF 2007/09/19
- From: "Viagra.com Inc" <>
[modeller_usage] (no subject) 2007/09/21
- From: "simran jeet" <>
[modeller_usage] help 2007/09/24
- From: "huifang liu" <>
[modeller_usage] disulfide bonds in aligned structures? 2007/09/24
- From: Mike White <>
Re: [modeller_usage] help 2007/09/24
- From: Modeller Caretaker <>
Re: [modeller_usage] (no subject) 2007/09/24
- From: Modeller Caretaker <>
Re: [modeller_usage] disulfide bonds in aligned structures? 2007/09/24
- From: Modeller Caretaker <>
[modeller_usage] regarding loop refinement 2007/09/24
- From: "simran jeet" <>
[modeller_usage] Mutations 2007/09/24
- From:
Re: [modeller_usage] regarding loop refinement 2007/09/25
- From: Modeller Caretaker <>
Re: [modeller_usage] Mutations 2007/09/25
- From: Modeller Caretaker <>
[modeller_usage] _modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 1CPG 2007/09/25
- From: DANIEL TAYLOR <>
Re: [modeller_usage] _modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 1CPG 2007/09/25
- From: Modeller Caretaker <>
[modeller_usage] September 70% OFF 2007/09/26
- From: VIAGRA � Official Site <>
[modeller_usage] Models from secondary structure and distance constraints alone? 2007/09/26
- From: "Andrew D. Fant" <>
[modeller_usage] Modeling of a C-terminal segment 2007/09/28
- From: Bo Yang <>
Re: [modeller_usage] Modeling of a C-terminal segment 2007/09/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Models from secondary structure and distance constraints alone? 2007/09/28
- From: Modeller Caretaker <>
[modeller_usage] entangled domains 2007/09/30
- From: "Russell Green" <>
Re: [modeller_usage] entangled domains 2007/10/03
- From: Modeller Caretaker <>
Re: [modeller_usage] Mutations 2007/10/04
- From:
Re: [modeller_usage] Mutations 2007/10/04
- From: Modeller Caretaker <>
[modeller_usage] qsub and cis restraints 2007/10/08
- From: "Gordon Wells" <>
Re: [modeller_usage] qsub and cis restraints 2007/10/08
- From: Modeller Caretaker <>
[modeller_usage] exploding GTP 2007/10/09
- From: Jonathan Winger <>
Re: [modeller_usage] exploding GTP 2007/10/09
- From: Modeller Caretaker <>
Re: [modeller_usage] exploding GTP 2007/10/09
- From: Modeller Caretaker <>
[modeller_usage] Class mymodel: How to randomize coordinates 2007/10/10
- From: Baptiste Legrand <>
Re: [modeller_usage] Class mymodel: How to randomize coordinates 2007/10/10
- From: Modeller Caretaker <>
Re: [modeller_usage] RE : Re: Class mymodel: How to randomize coordinates 2007/10/11
- From: Modeller Caretaker <>
[modeller_usage] Warning messages 2007/10/16
- From:
[modeller_usage] regarding N terminus region 2007/10/17
- From: "simran jeet" <>
[modeller_usage] regarding N terminus region 2007/10/17
- From: "simran jeet" <>
Re: [modeller_usage] Warning messages 2007/10/17
- From: Modeller Caretaker <>
Re: [modeller_usage] regarding N terminus region 2007/10/17
- From: Modeller Caretaker <>
[modeller_usage] ImportError: No module named socket (or math) 2007/10/18
- From:
Re: [modeller_usage] ImportError: No module named socket (or math) 2007/10/21
- From: Modeller Caretaker <>
[modeller_usage] Reg. model_energies.py 2007/10/21
- From: Saravanan <>
Re: [modeller_usage] Reg. model_energies.py 2007/10/21
- From: Modeller Caretaker <>
[modeller_usage] RMSD based clustering of models 2007/10/22
- From:
Re: [modeller_usage] RMSD based clustering of models 2007/10/22
- From: Modeller Caretaker <>
[modeller_usage] how to generate large number of models without using automodel class 2007/10/23
- From: harpreet singh <>
[modeller_usage] Refine 2007/10/23
- From: "Dany Naranjo Feliciano" <>
Re: [modeller_usage] how to generate large number of models without using automodel class 2007/10/23
- From: Modeller Caretaker <>
Re: [modeller_usage] Refine 2007/10/23
- From: Modeller Caretaker <>
[modeller_usage] help 2007/10/24
- From: "simran jeet" <>
Re: [modeller_usage] help 2007/10/24
- From: Modeller Caretaker <>
[modeller_usage] plotdope problem 2007/10/29
- From: jacques deruchoud <>
[modeller_usage] validation 2007/10/29
- From: "Adriana Esteves" <>
[modeller_usage] validation with procheck 2007/10/29
- From: "Adriana Esteves" <>
Re: [modeller_usage] validation 2007/10/29
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2007/10/30
- From: "Chiranjit Chowdhury" <>
[modeller_usage] Asking about energy minimization after initial model 2007/10/30
- From: "Chiranjit Chowdhury" <>
[modeller_usage] query about alignment type 2007/10/31
- From: "Bhavya Jindal" <>
Re: [modeller_usage] validation with procheck 2007/11/01
- From: Michael Sadowski <>
[modeller_usage] DOPE applied to multichains 2007/11/02
- From: DimitryASuplatov <>
Re: [modeller_usage] DOPE applied to multichains 2007/11/02
- From: Modeller Caretaker <>
Re: [modeller_usage] DOPE applied to multichains 2007/11/02
- From: Modeller Caretaker <>
[modeller_usage] Transfer_xyz question 2007/11/05
- From: Ali Algarrous <>
Re: [modeller_usage] Transfer_xyz question 2007/11/05
- From: Modeller Caretaker <>
[modeller_usage] symmetry in automodel 2007/11/06
- From: "Gordon Wells" <>
Re: [modeller_usage] Transfer_xyz question 2007/11/06
- From: Ali Algarrous <>
Re: [modeller_usage] Transfer_xyz question 2007/11/06
- From: Ali Algarrous <>
[modeller_usage] Asking about energy minimization after initial model] 2007/11/06
- From: "Chiranjit Chowdhury" <>
Re: [modeller_usage] Transfer_xyz question 2007/11/06
- From: Modeller Caretaker <>
Re: [modeller_usage] symmetry in automodel 2007/11/06
- From: Modeller Caretaker <>
[modeller_usage] Fwd: validation and log file 2007/11/10
- From:
[modeller_usage] ligand 2007/11/10
- From:
[modeller_usage] ligand 2 2007/11/10
- From:
[modeller_usage] Writing out chain ID in the PDB 2007/11/12
- From: "Vadim Patsalo" <>
Re: [modeller_usage] Writing out chain ID in the PDB 2007/11/12
- From: Modeller Caretaker <>
Re: [modeller_usage] Fwd: validation and log file 2007/11/12
- From: Modeller Caretaker <>
Re: [modeller_usage] ligand 2 2007/11/12
- From: Modeller Caretaker <>
[modeller_usage] Modeller creating strange structures 2007/11/12
- From: "Russell Green" <>
[modeller_usage] HOH 2007/11/15
- From: "Adriana Esteves" <>
Re: [modeller_usage] HOH 2007/11/15
- From: Modeller Caretaker <>
[modeller_usage] November 72% OFF 2007/11/20
- From: Canadian Doctor Willa Gillespie <>
[modeller_usage] alignment_question 2007/11/21
- From: Urszula Uciechowska <>
[modeller_usage] comparing models 2007/11/21
- From:
[modeller_usage] loop refinement 2007/11/22
- From: Laura Lopez <>
[modeller_usage] PIR format 2007/11/22
- From: Urszula Uciechowska <>
Re: [modeller_usage] loop refinement 2007/11/22
- From: Modeller Caretaker <>
[modeller_usage] pir format 2007/11/27
- From: Urszula Uciechowska <>
Re: [modeller_usage] pir format 2007/11/27
- From: Modeller Caretaker <>
[modeller_usage] Alignment editors? 2007/11/28
- From: Esben Jannik Bjerrum <>
[modeller_usage] mutate model 2007/12/03
- From: "suji george" <>
[modeller_usage] post translational modification 2007/12/03
- From: "suji george" <>
[modeller_usage] Modeller 2007/12/04
- From: Nataly Amorim <>
Re: [modeller_usage] Modeller 2007/12/04
- From: Modeller Caretaker <>
Re: [modeller_usage] post translational modification 2007/12/05
- From: Modeller Caretaker <>
[modeller_usage] Modelling long alpha-chains 2007/12/07
- From: DimitryASuplatov <>
[modeller_usage] Dope output? 2007/12/17
- From: "Dany Naranjo Feliciano" <>
[modeller_usage] model-loop 2007/12/18
- From: Urszula Uciechowska <>
Re: [modeller_usage] model-loop 2007/12/18
- From: Marcin Feder <>
Re: [modeller_usage] Dope output? 2007/12/18
- From: Modeller Caretaker <>
[modeller_usage] model-loop 2007/12/19
- From: Urszula Uciechowska <>
[modeller_usage] multiple target sequences 2007/12/20
- From: "Han Choe" <>
Re: [modeller_usage] December 74% OFF 2007/12/29
- From: Doctor Harriett Lacey <>

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