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[modeller_usage] modelling a protein-receptor complex



Hi,

I have a protein-receptor complex (P1:R1) with known structure.
I'd like to model the same receptor with another protein in complex (P2:R1).
I can easily model P2 based on P1 but I am not sure how to do it in the complex. I also have a receptor, R2 that shows homology to R1 and would like to model the P2:R2 complex. I can model R2 but again I have problems modeling the complex. I am new to Modeller and would appreciate specific help with the input files.
Thanks a lot in advance!

- Eva