[modeller_usage] Including disulfide bonds

[Atila Iamarino <>]

Hi all,

I'm interested in modeling a protein forcing disulfide bridges but my 
protein has two chains. How do I set the residue in the .py file?

# Redefine the special_patches routine to include the additional disulfides
# (this routine is empty by default):
class mymodel(automodel):
   def special_patches(self, aln):
       # A disulfide between residues 8 and 45:
       self.patch(residue_type='DISU', residues=(self.residues['8'],
                                                 self.residues['45']))

--
Atila Iamarino
L.E.M.B. - Laboratory of Molecular Evolution and Bioinformatics
Av. Prof. Lineu Prestes, 1734 - USP (University of São Paulo) - ICB
Zip: 05508-000 Phone: +55 11 30917290 / +55 11 30918453