[modeller_usage] ImportError: No module named automodel...
To:
Subject: [modeller_usage] ImportError: No module named automodel...
From: matteo <>
Date: Wed, 30 May 2007 11:37:54 +0200
hi!
i've just installed modeller9v1 from the source code on a x386 pc...
everything went fine, but as i run mod9v1 xxx.py, i get this message:
Traceback (most recent call last):
File "<string>", line 1, in ?
File "/home/teo/_work/_m-i7/modeller.py", line 3, in ?
from modeller.automodel import * # Load the automodel class
ImportError: No module named automodel
i'm just using the default script file, with the proper file name:
# Homology modeling by the automodel class
from modeller import * # Load standard Modeller classes
from modeller.automodel import * # Load the automodel class
log.verbose() # request verbose output
env = environ() # create a new MODELLER environment to build this model in
# directories for input atom files
env.io.atom_files_directory = './:/home/teo/_work/_m-i7/'
a = automodel(env,
alnfile = 'm-i7.ali', # alignment filename
knowns = '1f88', # codes of the templates
sequence = 'm-i7') # code of the target
a.starting_model= 1 # index of the first model
a.ending_model = 1 # index of the last model
# (determines how many models to calculate)
a.make() # do the actual homology modeling
can anybody help me?
many thanks
matteo