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Re: [modeller_usage] DOPE score question

hori koshii wrote:

Hi all, just a short question to make sure if:
the assess_dope method in MODELLER accounts for all atoms when calculating the dope energy profile for each residue?
DOPE is calculated for all heavy atoms. See modlb/atmcls-mf.lib for the defined atom types, and for more detail the DOPE publication: http://salilab.org/pdf/174_SheSalProtSc2006.pdf 

	Ben Webb, Modeller Caretaker
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