[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] [Fwd: Re: The models miss the 40 first aa of the sequence]

From: 	Dany Naranjo Feliciano <dany@censa.edu.cu>
When I visualized the models using vmd, I can't see the first 40aa of
the sequence.

You should first check the generated PDB files with a text editor, to 
make sure the first 40aa are actually there. If they are, then either 
VMD is doing something weird (try a different PDB viewer) or the PDB 
file is corrupt in some way, which should be obvious from a visual 
inspection.

If they are not there, it's probably because you didn't ask Modeller to 
build those residues in the first place. Check your alignment.

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage