Re: [modeller_usage] regrding superpose.py

[Modeller Caretaker <modeller-care@ucsf.edu>]

vidhya sankar wrote:
> I have got a  RMS and DRMS value of after super position 2.0482 and 
> 1.5631 respectively.is it reliable value? .for  53.85% sequence identity

The RMS and DRMS alone are not sufficient; you must also consider the 
number of equivalent positions. See 
http://salilab.org/modeller/9v2/manual/node239.html

As for whether the value is "reliable", that depends on what you want to 
use it for.

	Ben Webb, Modeller Caretaker
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