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Re: [modeller_usage] Reg. align_codes error in profile_build.py in Mod9v2

saravanan wrote:

Traceback (most recent call last):
  File "build_profile.py", line 21, in ?
aln.append(file='p17787.fas', alignment_format='FASTA', align_codes='p17787' 
)
File "C:\Program Files\Modeller9v2\modlib\modeller\alignment.py", line 74, in 
append
    rewind_file, close_file)
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found 
 in the alignment file; ALIGN_CODES(       1) =  p17787
You have tried to read the sequence with code 'p17787' from the FASTA file 'p17787.fas', but Modeller couldn't find it. You should check the p17787.fas file to make sure it is in correct FASTA format, and does contain the p17787 sequence - i.e. it should contain the line '>p17787' followed by the sequence on the next line. Note that align codes are case-sensitive. 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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