I built a model of a protein using Modeller, and with the PDB file obtained, I'm
trying to model loops. I follow the online manual instructions "refining an
existing PDB file". However, when I run mod9v2 I obtain this error:( "No such
residue: %s" % indx )
Key Error: no such residue 266.
Well, that's simple to understand - there is no residue called "266" in
your model.
In the logfile I don't see what is wrong, and in PDB file 266 residue exists,
this is why I don't understand the error "no such residue 266".
You must be mistaken. Are you sure the residue doesn't have a chain ID,
e.g. "266:A" ?