It appears to me that the question was general even though it was mailed to
Modeller-specific list. So no, Modeller can't do protein docking, but yes,
protein-protein docking can be done. See links below for more info:
My general advice: whenever in doubt, go to Wikipedia and type few keywords
- it comes up with something relevant more often than not.
Cheers,
Mensur
At 10:35 AM 9/4/2007, Modeller Caretaker wrote:
rgerber2@bigred.unl.edu wrote:
> I was wondering if it was possible, given two protein sequences or
> structures, to show possible docking interactions between the two
> proteins? And if so, how this is done??
No - Modeller itself does not do any kind of protein-protein docking.
Ben Webb, Modeller Caretaker
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| Mensur Dlakic, PhD | Tel: (406) 994-6576 |
| Department of Microbiology | Fax: (406) 994-4926 |
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