I'm receiving the following error on linux with Modeller 9.2:
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = mod2hg42
Here's the alignment line from my python file:
aln = alignment(env, file='mod2hg42.fa', align_codes=('mod2hg42'))
Here's the contents of mod2hg42.fa (located in the same directory):
>mod2hg42
EEKLRRYLKRTVTELDSVTARLREVEHRAGEPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEPD
PDARLGGXLAAAGDFDAGFFGISPREALNXDPQQRIXLEISWEALERAGHDPVSLRGSATGVYTGSSTNDYGFLA
VSDPDEAHPYAITGTASSVASGRVAYCLGLEGPAXTVDTACSSSLTALHLAXESLRRDECGLALAGGVNVLSTPM
VTLGFDSQGGLAADGRIKPFSKAADGYTRSEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLIAPSGP
AQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGAVKTNVGHLESAAGVAG
VXKAVLALRHGEXPRTLHFDEPSPQIEWAVSVVSQARSWPAGERPRRAGVSSFGFGGTNAHVIVEEAPEADEPV
I've tried dozens of combinations, but I can't get around this error. Any
advice?
--
Dave Roe