Re: [modeller_usage] _modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 1CPG
To: DANIEL TAYLOR <>
Subject: Re: [modeller_usage] _modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 1CPG
From: Modeller Caretaker <>
Date: Tue, 25 Sep 2007 11:14:58 -0700
Cc:
DANIEL TAYLOR wrote:
I know this has been raised before but when looking through the
archieves I could'nt find an answer to this problem, I've redone all the
tutorials and out of ideas, so please can somebody help with this error
message I'm getting?
...
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was
not found in the alignment file; ALIGN_CODES( 1) = 1CPG
I can't really say much more than the error message: you don't have the
code '1CPG' in your alignment file. This could be because you have
mistyped the code, you used upper case in your script but lower case in
your alignment file (align codes are case sensitive), or your alignment
file is not valid PIR format. If you can't figure it out, follow up with
your alignment file and your script file.