Re: [modeller_usage] qsub and cis restraints

[Modeller Caretaker <>]

Gordon Wells wrote:
> Do classes inheriting from automodel get propagated when using the 
> sge_qsub parallel job? I can get a parallel run to work with automodel, 
> but not with a new class including a cis-peptide restraint defined in 
> special_restraints (which I can get to run in single proc mode).

My guess is that you've declared this subclass directly in your script, 
rather than in a separate module. The parallel job support uses the 
Python 'pickle' module to serialize objects, and that doesn't work for 
classes declared in the 'main' script. See 
http://salilab.org/modeller/9v2/manual/node380.html and 
examples/python/parallel-task.py.

	Ben Webb, Modeller Caretaker
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