Re: [modeller_usage] exploding GTP

[Modeller Caretaker <modeller-care@ucsf.edu>]

Jonathan Winger wrote:
> When modeling GTP and metal ions into my protein, using a template  
> with 2 metal ions and an ATP analog, the GTP atoms end up  
> disconnected from each other and scattered around the active site,  
> and one of the two metals is launched out of the protein.  What can I  
> do to fix this?

What Modeller version are you using? What do your input scripts/PDB 
files/alignments look like?

	Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage