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Re: [modeller_usage] RMSD based clustering of models

 wrote:

By using modeller, I have generated 100 models. My next task is to cluster
these models based on RMSD. Is there any option in the modeller to cluster
models based on RMSD? Please let me know.
Sure, you can do simple RMSD-based clustering. See the cluster_cut argument to transfer_xyz: http://salilab.org/modeller/9v2/manual/node181.html
This is also used by automodel.cluster(): http://salilab.org/modeller/9v2/manual/node65.html 

	Ben Webb, Modeller Caretaker
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             http://www.salilab.org/modeller/
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