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Re: [modeller_usage] RMSD based clustering of models

To: csreddy@ncbs.res.in
Subject: Re: [modeller_usage] RMSD based clustering of models
From: Modeller Caretaker <modeller-care@salilab.org>
Date: Mon, 22 Oct 2007 09:57:55 -0700
Cc: modeller_usage@salilab.org

csreddy@ncbs.res.in wrote:

By using modeller, I have generated 100 models. My next task is to cluster
these models based on RMSD. Is there any option in the modeller to cluster
models based on RMSD? Please let me know.

Sure, you can do simple RMSD-based clustering. See the cluster_cutargument to transfer_xyz:http://salilab.org/modeller/9v2/manual/node181.html

This is also used by automodel.cluster():http://salilab.org/modeller/9v2/manual/node65.html

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage

References:
- [modeller_usage] RMSD based clustering of models
  - From: csreddy@ncbs.res.in

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