Hi Esben. Sorry I didn't see your posting earlier. Esben Jannik Bjerrum wrote:
Jalview (http://www.jalview.org) makes an attempt at preserving the PIR comment lines specifically for this purpose. There is also a setting in the preferences to enable 'modeller style PIR' output, which means that it will try and keep the sequence start/end numbering in sync with the residue numbering entries in the information field.This is not entirely modeller specific, but related. Do anyone know of an alignment editor which accepts, but doesn't delete the PIR comment lines? So far I have just hand edited the PIR file from a fasta file, but now I'm trying to model a multimeric and multidomain protein which makes it very complicated and cumbersome.
hope this helps. Jim -- ------------------------------------------------------------------- J. B. Procter (ENFIN/VAMSAS) Barton Bioinformatics Research Group Phone/Fax:+44(0)1382 388734/345764 http://www.compbio.dundee.ac.uk