Modeller_Usage Mailing List (by thread)
- [modeller_usage] Theory regarding filling of gaps,
Samuel Genheden (a03samge)
- [modeller_usage] Antibody Modelling,
- [modeller_usage] Modeller 9v3 release,
Modeller Caretaker
- [modeller_usage] Question about alignment.align(),
Vadim Patsalo
- [modeller_usage] I'm a beginner,
Lella Sana
- [modeller_usage] Taking into account additional residues,
valeria losasso
- [modeller_usage] Strange results from loop modelling,
Samuel Genheden (a03samge)
- Re: [modeller_usage] Alignment editors?,
James Procter
- [modeller_usage] Some tutorial issues,
Michael Mayhew
- [modeller_usage] code to generate canonical alpha-helix from sequence,
Yun He
- [modeller_usage] Using Fortran 90 with modeller,
Lee, Jinwoo
- [modeller_usage] fuse 3-residue peptide into a protein,
Bingding Huang
- [modeller_usage] Improper packing,
jit
- [modeller_usage] loop refinement with disulfide patch,
M. Seigneuret
- [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM),
sui x.g.
- [modeller_usage] building loops in crystal structure,
Simpson, Lisa M
- [modeller_usage] Modelling complexes,
Chido Mpamhanga
- [modeller_usage] Using only partial information for the model,
Stéphane Téletchéa
- [modeller_usage] parallel modeller,
Starr Hazard
- [modeller_usage] problem of strand/sheet,
model model
- [modeller_usage] [Fwd: Modeller Objective Function],
Modeller Caretaker
- [modeller_usage] Modelling extra residues, not present in template,
Hanudatta Atreya
- [modeller_usage] long loops modeling,
Ivan Anishchenko
- [modeller_usage] Error when using dope_loopmodel,
Florian Odronitz
- [modeller_usage] DOPE profile of target structure,
Hanudatta Atreya
- [modeller_usage] What are the considerations to model a cytosol protein using nuclear protein.,
Saravanan
- [modeller_usage] symmetry and molecular dynamics,
JEAN WATERMEYER
- [modeller_usage] MODELLER and USER FORMAT restraints,
Yingang Feng
- [modeller_usage] inducing kink in a helix,
Marta Rossini
- [modeller_usage] FW: inducing kink in a helix,
Marta Rossini
- [modeller_usage] Help,
matziast
- [modeller_usage] ALIGN_CODE,
barwellj
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 19,
Vadim Patsalo
- [modeller_usage] modelling multiple sequences in one go,
navkaranj
- [modeller_usage] running separate files from different folders,
navkaranj
- [modeller_usage] Help <Traceback>,
matziast
- [modeller_usage] Regarding DOPE model assessment values (Mohan),
m . b . rajasekaran
- [modeller_usage] Trouble running superpose on subsets of multichain pdbs,
Jake Gunn-Glanville
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21,
Vadim Patsalo
- [modeller_usage] Help <exec prefix>,
matziast
- [modeller_usage] (no subject),
eashwar annipindi
- [modeller_usage] secondary structure restraints,
Marta Rossini
- [modeller_usage] superposition based on a subset of aligned residues,
Jake Gunn-Glanville
- [modeller_usage] Error message: attempting superposition based on a subset of positions,
Jake Gunn-Glanville
- [modeller_usage] Hang/crash on clustering,
James Irving
- [modeller_usage] help at first script,
matziast
- [modeller_usage] Loop Models,
Gilles Truan
- [modeller_usage] help at second script,
matziast
- [modeller_usage] one question,please answer,
Maryam Nikoosaleh
- [modeller_usage] EM density maps for building models?,
Juan Chang
- [modeller_usage] Modeller 9v4 release,
Modeller Caretaker
- [modeller_usage] multiple template model,
deepti nayar
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30,
salam pradeep
- [modeller_usage] PDB gap fill,
Anna Marabotti
- [modeller_usage] Searching the PDB for sequence with structure,
Florian Odronitz
- [modeller_usage] how add sidechains,
matziast
- [modeller_usage] Post - problem with modelling a chain using another chain as template,
plmallip
- [modeller_usage] multiple templates,
Petr Danecek
- [modeller_usage] PIR format clarification,
Thomas Juettemann
- [modeller_usage] Problem with running Flex-em,
Hua Li
- [modeller_usage] Parallel job,
Francesco Musiani
- [modeller_usage] Parallel job (part 2),
Francesco Musiani
- [modeller_usage] question about mutate_model,
Anna Marabotti
- [modeller_usage] restraint check,
Ryan
- [modeller_usage] non-proline cis-peptide bonds,
François Sampieri
- [modeller_usage] GA341 assessment,
Lella Sana
- [modeller_usage] symmetric hexamer,
o . h . weiergraeber
- [modeller_usage] a question on MODELLER usage,
Ivan Anishchenko
- [modeller_usage] Installation on Debian Linux,
Francesco Pietra
- [modeller_usage] Fwd: The results of your email commands,
刘君
- [modeller_usage] doutbs about file,
Amanda Moraes
- [modeller_usage] another doutbs about file,
Amanda Moraes
- [modeller_usage] Mismatch alignment-pdb,
Francesco Pietra
- [modeller_usage] Editing pdb file for a multimer,
Francesco Pietra
- [modeller_usage] Appending model pdb files,
Francesco Pietra
- [modeller_usage] working & accuracy of modeller,
rsachdeva
- [modeller_usage] Oligomer Modelling,
Manjunatha Karpenahalli
- [modeller_usage] Simple modeling with ligand,
Francesco Pietra
- [modeller_usage] build_profile.log?,
Μαρία Τζιαστούδη
- [modeller_usage] new to modeller,
Chinwe Ekenna
- [modeller_usage] modeling an oligomer,
Douglas Kojetin
- [modeller_usage] GPCR modeling,
Sharangdhar S. Phatak
- [modeller_usage] side chains turned inside out,
Josmar R. da Rocha
- [modeller_usage] question about a mix model,
Jesica MLM
- [modeller_usage] using modeller to refine a docking conformation,
Jake Gunn-Glanville
- [modeller_usage] problem with model-multiple-hetero.py,
sanjay singh
- [modeller_usage] problem with ligand modelling,
sanjay singh
- [modeller_usage] Rino Ragno è fuori ufficio/ is out of office,
Rino . Ragno
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 54,
sanjay singh
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 56,
salam pradeep
- [modeller_usage] Chaining models,
Stéphane Téletchéa
- [modeller_usage] protein-dna complex modeling,
prasun kumar
- Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 58,
salam pradeep
- [modeller_usage] 'import site' failed; use -v for traceback,
DimitryASuplatov
- [modeller_usage] objective function,
Amanda Moraes
- [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot,
rsachdeva
- [modeller_usage] (My) problems with BLK,
Francesco Pietra
- [modeller_usage] CHARMM atom type is not recognized (not in RADII_LIB): 15.999,
Wang Yanli
- [modeller_usage] from ylwang: loop conformation sampling,
Wang Yanli
- [modeller_usage] How to introduce a covalent bond in a model?,
DimitryASuplatov
- [modeller_usage] how to constrain automodel to remain closer to the template,
Jake Gunn-Glanville
- [modeller_usage] clockwise pentamer to anticlockwise model,
plmallip
- [modeller_usage] W> MODEL atom not classified: GLY:OXT GLY,
Joaquim Rui Rodrigues
- [modeller_usage] Cluster PDBs,
Wang Yanli
- Re: [modeller_usage] Need help in not modeling the propep feature in final model,
Modeller Caretaker
- [modeller_usage] Modelling an oligomer,
Lucas Bleicher
- [modeller_usage] PCA problem,
Julien Pele
- [modeller_usage] Is there anything wrong with my configuration file?My models look so strange,
wayj86 wayj86
- [modeller_usage] radii.lib,
Joaquim Rui Rodrigues
- [modeller_usage] Using of a template with the coordinates of the Calpha atoms only.,
Jean-Paul Becker
- [modeller_usage] Modeller 9v5 release,
Modeller Caretaker
- [modeller_usage] keeping original residue numbers in final model,
Mauricio Carrillo Tripp
- [modeller_usage] adding two proteins,
prasun kumar
- [modeller_usage] dopehr_loopmodel crashed,
Mauricio Carrillo Tripp
- [modeller_usage] automodel vs loopmodel,
Mauricio Carrillo Tripp
- [modeller_usage] adding two residues of different peptides,
prasun kumar
- [modeller_usage] to build ions,
vidhya ganesh
- [modeller_usage] How to change directory path for atom files,
khuram sb
- [modeller_usage] modeling of phosphorylated polypeptide,
Xiao-Ping Zhang
- Re: [modeller_usage] modeling of phosphorylated polypeptide,
Modeller Caretaker
[modeller_usage] interpolating missing residues,
BIN ZHANG
[modeller_usage] mutate script from modeller site,
DimitryASuplatov
[modeller_usage] Heme,
Bo Yang
[modeller_usage] Building a tetramer,
Nicky Thrupp
[modeller_usage] template alignment challenge,
Chinwe Ekenna
[modeller_usage] Error massage,
nagaraju ngaraju
[modeller_usage] How to install pylab in modeller?,
vidhya ganesh
Re: [modeller_usage] modeller_why ther is know gui.,
Jayashankar
[modeller_usage] model a peptide without moving a part of it,
Omar Piña
[modeller_usage] Visuvalise,
nagaraju ngaraju
[modeller_usage] Loop model refinement level,
Mauricio Carrillo Tripp
[modeller_usage] normalized DOPE - expected values vs quality of template?,
Daniel Rigden
[modeller_usage] question for a (putative?) disulfide bridge,
Anna Marabotti
[modeller_usage] Transfer_xyz or other methods?,
plmallip
[modeller_usage] how to build a model from a template with only CA atoms?,
Lixia Jin Day
[modeller_usage] R: R: question for a (putative?) disulfide bridge,
Anna Marabotti
[modeller_usage] dope batch processing,
jinlian
[modeller_usage] Residues in disallowed region,
Bo Yang
[modeller_usage] manual restaints in muultiple template modeling?,
plmallip
[modeller_usage] Atom has GB/SA radius 0.0000.,
Joaquim Rui Rodrigues
Re: [modeller_usage] R: R: question for a (putative?) disulfide bridge,
Modeller Caretaker
[modeller_usage] import errors,
Mauricio Carrillo Tripp
[modeller_usage] Multicore Jobs on QB3 Cluster Nodes,
Albion Baucom
[modeller_usage] POSITION IONS IN MODELS,
Lella Sana
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