[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] Modelling complexes

Chido Mpamhanga wrote:
I'm new with modeller, I have used it to do simple models.. However I'm now trying to model a tri-metric complex where the active site of the complex is includes all three subunits. How do i go about this?

Building multi-chain models is straightforward, particularly if you have a multimeric template - just add chain breaks ('/') to your alignment where needed. See the example in the manual:

If you have ligands which interact with two or more chains, Modeller should handle them correctly, as the constraints are distance-based, not sequence-based.

	Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage