I would like to create an oligomeric (hexamer) model. I have a Ca-
only hexameric model (chains A-F) to use for the template and an
experimentally determined monomer structure I would like to use for
the target. Essentially, I would like to map six of the monomer
target structures to chains A-F of the template. I've attempted to do
this using the "model-myini.py" script as described here:
but my output hexamer structure ends up looking like spaghetti. Am I
using the proper modeling script for this task? If so, what should
the alignment and target PDB files look like to map the monomer
structure to the hexamer structure?