[modeller_usage] how to constrain automodel to remain closer to the template
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Subject: [modeller_usage] how to constrain automodel to remain closer to the template
From: "Jake Gunn-Glanville" <>
Date: Fri, 19 Sep 2008 08:06:09 -0700
I have been modeling a protein with a template I am quite confident in, and a loop that I would like to use a separate template for. When I generate 200 models, they all seem to show a great deal of structural diversity. Curious, I developed 20 models of a solved structure against itself, and found a bit of diversity in all of these resulting models as well. Is there a good way to constrain automodel so that it diverses less from the templates when thre are no obvious residue clashes forcing it to make adjustments?
-- Jacob Glanville Informatics Associate Rinat Biotherapeutics & Bioinnovation Center; Pfizer Inc. 415 497 3552