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[modeller_usage] modeling of phosphorylated polypeptide


Many proteins are phosphorylated in vivo and and the status of their
phosphorylation correlate to their function. The residues which are
phosphorylated (Thr, Tyr or Ser) can be determined by mass spectrometry.
I wonder how to build a phosphorylated model directly or how to apply a
patch on a model to get a phosphorylated model in Modeller? 

Thank you advance for your suggestions.

Xiao-Ping Zhang