[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] adding two residues of different peptides

prasun kumar wrote:
> There is a PATCH for adding sulfide bridge among two sulfur atom in a
> peptide.Can we use this concept for adding two residues of two different
> peptides at a certain angle...........

See my previous reply at
http://salilab.org/archives/modeller_usage/2008/msg00257.html regarding
suitable patching. If you wanted to fix some angle, you could add an
angle restraint or define the angle in the patch definition
(top_heav.lib) and set the mean value for the angle in the parameter
file (par.lib).

	Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage