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Re: [modeller_usage] dopehr_loopmodel crashed

Thank you, my loop refinement calculation has ended successfully now, however...

You're only building one loop model. I'd recommend building several, so
that you can sample the conformational space more effectively. This also
allows for the possibility that some of the models are not produced due
to optimizer failure, as you have discovered.

OK, so after I get a bunch of models with a refined loop, how can I tell which one is better
than the others?

        0     |  Mauricio Carrillo Tripp, PhD
     /         |     Department of Molecular Biology, TPC6
 0            |     The Scripps Research Institute
     \         |     10550 North Torrey Pines Road
        0     |     La Jolla, California 92037
     /         |
 0            |