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[modeller_usage] help with using created structure

Thanks for all the previous and useful replies they helped a lot.
i have successfully created protein structures using modeller 9v4 
but i am facing a new challenge ..... the structures are to be further used in creating a docking site for identified drug targets..... the challenge i'm facing is that all my structure result as regards the docking site say no site found(using Qsitefinder).... this sir is not possible as they should  have docking sites.. what do you advise that i do.....
ekenna chinwe