Modeller_Usage Mailing List (by date)

• Thread Index

• [modeller_usage] Modeller API 2009/01/03
  • From: "James Irving" <james.irving AT med.monash.edu.au>
• Re: [modeller_usage] Modeller API 2009/01/04
  • From: "James Irving" <james.irving AT med.monash.edu.au>
• Re: [modeller_usage] Modeller API 2009/01/06
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Adding missing atoms 2009/01/07
  • From: "Sarath Chandra" <sarathchandradantu AT gmail.com>
• Re: [modeller_usage] Adding missing atoms 2009/01/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] complete_pdb.py 2009/01/07
  • From: "Sarath Chandra" <sarathchandradantu AT gmail.com>
• [modeller_usage] help with using created structure 2009/01/08
  • From: Chinwe Ekenna <chiekenna AT yahoo.com>
• Re: [modeller_usage] complete_pdb.py 2009/01/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] help with using created structure 2009/01/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Distance Restraints: are they working? 2009/01/14
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Distance Restraints: are they working? 2009/01/14
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modeller API 2009/01/15
  • From: "James Irving" <james.irving AT med.monash.edu.au>
• Re: [modeller_usage] Modeller API 2009/01/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Need help with automating Modeller flow? 2009/01/19
  • From: Ashika Umanga Umagiliya <aumanga AT biggjapan.com>
• Re: [modeller_usage] Need help with automating Modeller flow? 2009/01/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] problems with modem 2009/01/27
  • From: Jochen Ismer <j.ismer AT googlemail.com>
• [modeller_usage] Rosetta Academic Training Workshop 2009/01/27
  • From: Nir London <nir AT rosettadesigngroup.com>
• Re: [modeller_usage] problems with modem 2009/01/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] problems with modem 2009/01/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] (no subject) 2009/01/30
  • From: pritesh bhat <priteshbht AT yahoo.co.in>
• Re: [modeller_usage] (no subject) 2009/01/31
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] (no subject) 2009/02/01
  • From: pawan raghav <pwnrghv AT yahoo.co.in>
• [modeller_usage] Fully automate the modelling process? 2009/02/03
  • From: Ashika Umanga Umagiliya <aumanga AT biggjapan.com>
• [modeller_usage] No log file output 2009/02/04
  • From: Haslina Hashim <haslina.hashim AT gmail.com>
• Re: [modeller_usage] No log file output 2009/02/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Fully automate the modelling process? 2009/02/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Building a model from multiple templates ? 2009/02/05
  • From: Ashika Umanga Umagiliya <aumanga AT biggjapan.com>
• Re: [modeller_usage] Building a model from multiple templates ? 2009/02/05
  • From: Ashika Umanga Umagiliya <aumanga AT biggjapan.com>
• [modeller_usage] Modeller 9v6 release 2009/02/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Same alignment + different arch = different structure? 2009/02/10
  • From: Christopher Kauffman <kauffman AT cs.umn.edu>
• Re: [modeller_usage] Same alignment + different arch = different structure? 2009/02/10
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Hydrogen name in modeller 2009/02/16
  • From: "Xia,Wei" <weixia1984 AT gmail.com>
• Re: [modeller_usage] Hydrogen name in modeller 2009/02/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Academic and Commercial 2009/02/18
  • From: salam pradeep <salampradeep AT gmail.com>
• Re: [modeller_usage] Academic and Commercial 2009/02/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Using modeller with a web form: how topass the provided key to modeller? 2009/02/20
  • From: Stéphane Téletchéa <stephane.teletchea AT univ-nantes.fr>
• Re: [modeller_usage] Using modeller with a web form: how topass the provided key to modeller? 2009/02/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] RE : help with residues numbering 2009/02/27
  • From: "BESSADOK Anis" <anis.bessadok AT cea.fr>
• Re: [modeller_usage] RE : help with residues numbering 2009/02/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] modeling question 2009/02/28
  • From: Jean-Paul Armache <jparmache AT lmb.uni-muenchen.de>
• [modeller_usage] loop modeling based on a template 2009/03/02
  • From: Marco Neves <marco.neves AT icrm.cnr.it>
• [modeller_usage] Histidine protonation state with allhmodel 2009/03/03
  • From: Jean Didier Pie Marechal <JeanDidier.Marechal AT uab.cat>
• [modeller_usage] Modeller and DNA-protein complexes. 2009/03/03
  • From: Chaix Denis <denis.chaix AT cbs.cnrs.fr>
• Re: [modeller_usage] modeling question 2009/03/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] loop modeling based on a template 2009/03/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Histidine protonation state with allhmodel 2009/03/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modeller and DNA-protein complexes. 2009/03/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Combining steps in Basic and Advanced Tutorial ? 2009/03/04
  • From: Ashika Umanga Umagiliya <aumanga AT biggjapan.com>
• [modeller_usage] Completing missing residues 2009/03/04
  • From: Lee Soin <nomadoro AT gmail.com>
• Re: [modeller_usage] Completing missing residues 2009/03/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Combining steps in Basic and Advanced Tutorial ? 2009/03/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Problem applying two different restrictions.... 2009/03/05
  • From: Sergio Garay <sergio.alberto.garay AT gmail.com>
• Re: [modeller_usage] Problem applying two different restrictions.... 2009/03/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Problem applying two different restrictions ...(solved) 2009/03/06
  • From: Sergio Garay <sergio.alberto.garay AT gmail.com>
• [modeller_usage] import pylab error 2009/03/08
  • From: vamsi <g0601125 AT nus.edu.sg>
• Re: [modeller_usage] import pylab error 2009/03/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling of a copper binding cluster 2009/03/12
  • From: Stephen.Hearnshaw AT uea.ac.uk
• Re: [modeller_usage] Modelling of a copper binding cluster 2009/03/12
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] changing the seed 2009/03/18
  • From: Amanda Moraes <maia.amanda AT yahoo.com.br>
• Re: [modeller_usage] changing the seed 2009/03/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] refinement of protein-DNA complex 2009/03/19
  • From: Jan Kosinski <jan.kosinski AT gmail.com>
• [modeller_usage] Subject: refinement of protein-DNA complex 2009/03/19
  • From: Mauricio Carrillo Tripp <trippm AT scripps.edu>
• [modeller_usage] side-chain chi1 different from the templates 2009/03/23
  • From: Aline Thomas <aline.thomas AT ibs.fr>
• Re: [modeller_usage] side-chain chi1 different from the templates 2009/03/23
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Rosetta Academic Training Webinar 2009/03/25
  • From: Nir London <nir AT rosettadesigngroup.com>
• [modeller_usage] question about salt bridge 2009/03/26
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] question about salt bridge 2009/03/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] R: question about salt bridge 2009/03/27
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] Filling in Missing atoms for a docking complex 2009/04/01
  • From: Jack Shultz <jshultz AT hydrogenathome.org>
• Re: [modeller_usage] Filling in Missing atoms for a docking complex 2009/04/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Filling in Missing atoms for a docking complex 2009/04/01
  • From: Jack Shultz <jshultz AT hydrogenathome.org>
• Re: [modeller_usage] Filling in Missing atoms for a docking complex 2009/04/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling a multiheme cytochrome 2009/04/02
  • From: Stephen.Hearnshaw AT uea.ac.uk
• Re: [modeller_usage] Modelling a multiheme cytochrome 2009/04/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] A problem for using loop models: the metal ions came together too close 2009/04/21
  • From: wayj86 wayj86 <wayj86 AT gmail.com>
• Re: [modeller_usage] A problem for using loop models: the metal ions came together too close 2009/04/22
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Fwd: Multiple Alignment Error 2009/04/27
  • From: •·.·´¯`·.·• Iƒƒ¥ •·.·´¯`·.·• <sil3nt.eyez AT gmail.com>
• Re: [modeller_usage] Fwd: Multiple Alignment Error 2009/04/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Multiple Alignment Problem 2009/04/29
  • From: •·.·´¯`·.·• Iƒƒ¥ •·.·´¯`·.·• <sil3nt.eyez AT gmail.com>
• [modeller_usage] Need Help with model accuracy 2009/04/30
  • From: Mª Victoria Ruiz Pérez <mariaviruiz AT hotmail.com>
• [modeller_usage] resolution 2009/04/30
  • From: Marc De Maeyer <Marc.DeMaeyer AT fys.kuleuven.be>
• Re: [modeller_usage] resolution 2009/04/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Need Help with model accuracy 2009/04/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Multiple Alignment Problem 2009/04/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Tetramer symmetry for hERG 2009/05/12
  • From: "Du-Cuny,Lei" <lducuny AT mdanderson.org>
• Re: [modeller_usage] Tetramer symmetry for hERG 2009/05/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] helix model 2009/05/20
  • From: Jairo Rocha <jairo AT uib.es>
• [modeller_usage] (no subject) 2009/05/20
  • From: David Hall <dwash59_2000 AT yahoo.com>
• Re: [modeller_usage] (no subject) 2009/05/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] helix model 2009/05/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Fully automated alignment and modeling 2009/05/27
  • From: mzugravu AT buffalo.edu
• [modeller_usage] alignment file in the PIR format 2009/05/27
  • From: mzugravu AT buffalo.edu
• [modeller_usage] (no subject) 2009/05/27
  • From: "Ha Hung Chuong Nguyen" <nguyen AT sissa.it>
• Re: [modeller_usage] Fully automated alignment and modeling 2009/05/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] loop refining of a multi chain protein 2009/05/28
  • From: subarna thakur <thakur.subarna AT yahoo.co.in>
• Re: [modeller_usage] loop refining of a multi chain protein 2009/05/28
  • From: subarna thakur <thakur.subarna AT yahoo.co.in>
• [modeller_usage] how add FE-S cluster in PDB 2009/05/29
  • From: subarna thakur <thakur.subarna AT yahoo.co.in>
• Re: [modeller_usage] loop refining of a multi chain protein 2009/05/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] how add FE-S cluster in PDB 2009/05/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] (no subject) 2009/05/29
  • From: subarna thakur <thakur.subarna AT yahoo.co.in>
• [modeller_usage] problem with hetrotetrameric protein 2009/06/02
  • From: subarna thakur <thakur.subarna AT yahoo.co.in>
• Re: [modeller_usage] problem with hetrotetrameric protein 2009/06/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeller output directory 2009/06/16
  • From: Riadh HAMMAMI <Riadh.Hammami AT fst.rnu.tn>
• Re: [modeller_usage] Modeller output directory 2009/06/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeller 9v7 release 2009/06/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] MODELLER BASIC HELP 2009/06/18
  • From: bharat lal <monu46010 AT yahoo.com>
• [modeller_usage] restraints loosed after loop refinement 2009/06/18
  • From: mario ciappy <mariociap AT yahoo.it>
• [modeller_usage] iterative_structural_align question 2009/06/18
  • From: Mike White <mwhite AT DrexelMed.edu>
• Re: [modeller_usage] restraints loosed after loop refinement 2009/06/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] MODELLER BASIC HELP 2009/06/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] iterative_structural_align question 2009/06/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Superposition Problem 2009/06/23
  • From: Christopher Mohr <Christopher.mohr AT gmx.net>
• Re: [modeller_usage] Superposition Problem 2009/06/23
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Check out my photos on Facebook 2009/06/23
  • From: Salam Pradeep <invite+25ynbywx AT facebookmail.com>
• [modeller_usage] Homology Modelling homodimer - alignment 2009/06/24
  • From: Christopher Mohr <christopher.mohr AT gmx.net>
• [modeller_usage] PSC/NRBSC Workshop on QC/MM Methods and Applications 2009/06/24
  • From: Troy Wymore <wymore AT psc.edu>
• Re: [modeller_usage] Homology Modelling homodimer - alignment 2009/06/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling Query 2009/06/25
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] Modelling Query 2009/06/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling Query 2009/06/25
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] Modelling Query 2009/06/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling Query 2009/06/25
  • From: Mensur Dlakic <mdlakic AT montana.edu>
• Re: [modeller_usage] Modelling Query 2009/06/25
  • From: Alessandra marques <alessandragmarques AT hotmail.com>
• [modeller_usage] Any version without python embeded ? 2009/06/26
  • From: Stéphane Téletchéa <stephane.teletchea AT univ-nantes.fr>
• Re: [modeller_usage] Any version without python embeded ? 2009/06/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling Query 2009/06/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling Query 2009/06/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Aligning two protein sequences. 2009/06/30
  • From: Sehrish Batool <sehrish_batool.bsbi AT yahoo.com>
• Re: [modeller_usage] Aligning two protein sequences. 2009/06/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] resuming a crashed job 2009/06/30
  • From: Søren Skovstrup Hansen <ssk AT farma.ku.dk>
• [modeller_usage] regarding multiple sequence alignment 2009/07/01
  • From: shilpi <shilpi.chaurasia AT gmail.com>
• Re: [modeller_usage] regarding multiple sequence alignment 2009/07/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] resuming a crashed job 2009/07/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeling large protein sequence having homologues with less similarity. 2009/07/06
  • From: Sehrish Batool <sehrish_batool.bsbi AT yahoo.com>
• Re: [modeller_usage] modeller_usage Digest, Vol 8, Issue 45 2009/07/06
  • From: shilpi <shilpi.chaurasia AT gmail.com>
• Re: [modeller_usage] Modeling large protein sequence having homologues with less similarity. 2009/07/06
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] completing incomplete templates 2009/07/07
  • From: Steve Seibold <seibold AT chemistry.msu.edu>
• Re: [modeller_usage] completing incomplete templates 2009/07/07
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] completing incomplete templates 2009/07/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Restraints from SAXS data 2009/07/07
  • From: "NM Burton, Biochemistry" <Nick.Burton AT bristol.ac.uk>
• Re: [modeller_usage] Restraints from SAXS data 2009/07/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Adjust weight of homology restraints 2009/07/08
  • From: Nick Burton <Nick.Burton AT bristol.ac.uk>
• Re: [modeller_usage] Adjust weight of homology restraints 2009/07/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Adjust weight of homology restraints 2009/07/09
  • From: Nick Burton <Nick.Burton AT bristol.ac.uk>
• Re: [modeller_usage] Adjust weight of homology restraints 2009/07/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling Multiple Domains into One Multidomain Construct 2009/07/12
  • From: "Cihan Aydin" <cihan.aydin AT umassmed.edu>
• [modeller_usage] the pdb template has a break in the chain 2009/07/15
  • From: Shawna Frazier <sfrazier AT caltech.edu>
• [modeller_usage] import site failed 2009/07/16
  • From: Lixia Jin Day <ljin12 AT asu.edu>
• Re: [modeller_usage] import site failed 2009/07/16
  • From: Thomas Juettemann <juettemann AT gmail.com>
• Re: [modeller_usage] import site failed 2009/07/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] the pdb template has a break in the chain 2009/07/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import site failed 2009/07/16
  • From: Mensur Dlakic <mdlakic AT montana.edu>
• Re: [modeller_usage] Modelling Multiple Domains into One Multidomain Construct 2009/07/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Error query!! 2009/07/17
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] Error query!! 2009/07/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Introducing HETATM ligands into models based on multiple templates 2009/07/20
  • From: Violetta Kivovich <violetta.kivovich AT gmail.com>
• Re: [modeller_usage] modeling a fragment of the target and template sequences 2009/07/21
  • From: bharat lal <monu46010 AT yahoo.com>
• Re: [modeller_usage] Modeling a structure 2009/07/21
  • From: bharat lal <monu46010 AT yahoo.com>
• Re: [modeller_usage] Modeling a structure 2009/07/21
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Introducing HETATM ligands into models based on multiple templates 2009/07/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeling a fragment of the target and template sequences 2009/07/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Regarding energy minimization in modeller 2009/07/27
  • From: snoze pa <snoze.pa AT gmail.com>
• Re: [modeller_usage] Regarding energy minimization in modeller 2009/07/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] restraining bonds between het ligand and side chain atoms 2009/08/03
  • From: Violetta Kivovich <violetta.kivovich AT gmail.com>
• [modeller_usage] refinement of model, but keeping close to templates 2009/08/04
  • From: Robert Jorissen <robjorissen AT yahoo.com.au>
• Re: [modeller_usage] restraining bonds between het ligand and side chain atoms 2009/08/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] refinement of model, but keeping close to templates 2009/08/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] query!!! 2009/08/04
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] query!!! 2009/08/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] query about coil region!! 2009/08/05
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] query about coil region!! 2009/08/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] query about coil region!! 2009/08/05
  • From: Jacob Glanville <dr.jake AT gmail.com>
• Re: [modeller_usage] query about coil region!! 2009/08/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] how to evaluate which is the best model in "multiple template" example 2009/08/06
  • From: albumns <albumns AT yeah.net>
• Re: [modeller_usage] how to evaluate which is the best model in "multiple template" example 2009/08/06
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Heme in P450 2009/08/18
  • From: "Storbeck, K, Dr <storbeck AT sun.ac.za>" <storbeck AT sun.ac.za>
• Re: [modeller_usage] Heme in P450 2009/08/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] remove short helices 2009/08/18
  • From: Shawna Frazier <sfrazier AT caltech.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 8, Issue 60 2009/08/19
  • From: carlos Prudencio <crprudencio AT uol.com.br>
• Re: [modeller_usage] modeller_usage Digest, Vol 8, Issue 60 2009/08/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] remove short helices 2009/08/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] remove short helices 2009/08/22
  • From: Jacob Glanville <dr.jake AT gmail.com>
• [modeller_usage] database with PIR format, help 2009/08/25
  • From: "Quiliano Mesa, Miguel Angel" <46328 AT upch.edu.pe>
• Re: [modeller_usage] database with PIR format, help 2009/08/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] MODELLER behaviour with non-standard residues / HETATM 2009/08/29
  • From: Thomas Juettemann <juettemann AT gmail.com>
• Re: [modeller_usage] MODELLER behaviour with non-standard residues / HETATM 2009/08/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] validation 2009/08/31
  • From: Adriana Esteves <aesteves AT fcien.edu.uy>
• [modeller_usage] Issues Installing Modeller Ubuntu 8.10 2009/09/01
  • From: Ocar Campos <ocarnorsk138 AT gmail.com>
• Re: [modeller_usage] Issues Installing Modeller Ubuntu 8.10 2009/09/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] validation 2009/09/02
  • From: Adriana Esteves <aesteves AT fcien.edu.uy>
• [modeller_usage] Including hetatm when hetatm does not immediately follow ATOM list 2009/09/02
  • From: Shuo Huai Johnny Wu <wushuohuai AT gmail.com>
• Re: [modeller_usage] Including hetatm when hetatm does not immediately follow ATOM list 2009/09/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Loop Modeling using only part of a PDB file 2009/09/07
  • From: Robert Selwyne <robertselwyne AT gmail.com>
• [modeller_usage] validation 2009/09/08
  • From: Adriana Esteves <aesteves AT fcien.edu.uy>
• [modeller_usage] Modeling loop from a part of a sequence 2009/09/08
  • From: Robert Selwyne <robertselwyne AT gmail.com>
• [modeller_usage] Model evaluation 2009/09/08
  • From: vidhya ganesh <vidhya_81in AT yahoo.com>
• Re: [modeller_usage] Model evaluation 2009/09/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Loop Modeling using only part of a PDB file 2009/09/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Sehrish Batool invites you to connect 2009/09/13
  • From: Sehrish Batool via Yahoo! <sehrish_batool.bsbi AT yahoo.com>
• [modeller_usage] Evaluation of membrane proteins models 2009/09/16
  • From: "BESSADOK Anis" <anis.bessadok AT cea.fr>
• [modeller_usage] Question about Search for templates command... 2009/09/16
  • From: Sergio Garay <sergio.alberto.garay AT gmail.com>
• Re: [modeller_usage] Evaluation of membrane proteins models 2009/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Adding a salt bridge 2009/09/19
  • From: "Umang Shah" <umang.shah AT student.rmit.edu.au>
• Re: [modeller_usage] Adding a salt bridge 2009/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Question about Search for templates command... 2009/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] zinc coordination 2009/09/25
  • From: frank peelman <frankpeelman AT gmail.com>
• [modeller_usage] How to deal with a part of protein sequence that have no alignment with the template 2009/09/28
  • From: xiazhendong1986 <xiazhendong1986 AT 163.com>
• Re: [modeller_usage] How to deal with a part of protein sequence that have no alignment with the template 2009/09/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] zinc coordination 2009/09/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Helix rotation 2009/10/05
  • From: Liam Browne <liam.browne AT hotmail.co.uk>
• Re: [modeller_usage] Helix rotation 2009/10/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] request a clear method for modelling a dimeric protein 2009/10/07
  • From: Othman Houcemeddine <othmanhoucemeddine AT yahoo.fr>
• [modeller_usage] Help with iterative modelling tutorial 2009/10/09
  • From: Jonathan Harris <HarrisJD AT cardiff.ac.uk>
• [modeller_usage] Parallel modeller 2009/10/09
  • From: Hugo Gutiérrez de Teran <hugo.teran AT usc.es>
• Re: [modeller_usage] Parallel modeller 2009/10/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] request a clear method for modelling a dimeric protein 2009/10/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Help with iterative modelling tutorial 2009/10/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeling ligands in the binding site 2009/10/11
  • From: Qinghua Liao <fantasticqhl AT yahoo.com>
• Re: [modeller_usage] Modeling ligands in the binding site 2009/10/12
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Parallel modeller 2009/10/13
  • From: Hugo Gutiérrez de Teran <hugo.teran AT usc.es>
• Re: [modeller_usage] Parallel modeller 2009/10/13
  • From: Hugo Gutiérrez de Teran <hugo.teran AT usc.es>
• Re: [modeller_usage] Parallel modeller 2009/10/13
  • From: Hugo Gutiérrez de Teran <hugo.teran AT usc.es>
• Re: [modeller_usage] Parallel modeller 2009/10/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Bad Contacts and Dimeric symmetry 2009/10/15
  • From: nornik <nornik AT student.chalmers.se>
• [modeller_usage] ubuntu installation with python 2.6 2009/10/20
  • From: Knut J Bjuland <knutjbj AT hotmail.com>
• Re: [modeller_usage] ubuntu installation with python 2.6 2009/10/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] building a model with zn ions 2009/10/20
  • From: anu priya <anuupriyaa.g AT gmail.com>
• Re: [modeller_usage] building a model with zn ions 2009/10/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Rebuilding pdball.pir file for mod9v1 2009/10/22
  • From: Praveen Raj <pravee1216 AT gmail.com>
• Re: [modeller_usage] Rebuilding pdball.pir file for mod9v1 2009/10/22
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] ERROR ALIGN_CODES 2009/10/22
  • From: Leonardo Herrera <ldhz04 AT yahoo.com.mx>
• [modeller_usage] ERROR ALIGN_CODES 2009/10/22
  • From: Leonardo Herrera <ldhz04 AT yahoo.com.mx>
• Re: [modeller_usage] ERROR ALIGN_CODES 2009/10/23
  • From: nornik <nornik AT student.chalmers.se>
• [modeller_usage] Help with mutation! 2009/10/23
  • From: "tianjian3721" <tianjian3721 AT 163.com>
• [modeller_usage] Permission denied message 2009/10/25
  • From: Manoel Arcisio-Miranda <manoelarcisio AT yahoo.com.br>
• [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: Panagiotis Kastritis <pkastrit AT gmail.com>
• Re: [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Permission denied message 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Help with mutation! 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] ERROR ALIGN_CODES 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Bad Contacts and Dimeric symmetry 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: "Panagiotis L. Kastritis" <pkastrit AT gmail.com>
• Re: [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Stop renumbering of new model 2009/10/26
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: "Panagiotis L. Kastritis" <pkastrit AT gmail.com>
• Re: [modeller_usage] Stop renumbering of new model 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Model missing residues in a trimer 2009/10/26
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Stop renumbering of new model 2009/10/26
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] Res: Permission denied message 2009/10/27
  • From: Manoel Arcisio-Miranda <manoelarcisio AT yahoo.com.br>
• Re: [modeller_usage] Bad Contacts and Dimeric symmetry 2009/10/28
  • From: nornik <nornik AT student.chalmers.se>
• Re: [modeller_usage] Res: Permission denied message 2009/10/28
  • From: beauch46 AT msu.edu
• Re: [modeller_usage] Res: Permission denied message 2009/10/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Bad Contacts and Dimeric symmetry 2009/10/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Basic tutorial 2009/10/31
  • From: Marco <m77it AT yahoo.it>
• [modeller_usage] Basic tutorial 2009/10/31
  • From: Marco <m77it AT yahoo.it>
• [modeller_usage] Modeling ligands in the binding site 2009/11/02
  • From: Qinghua Liao <fantasticqhl AT yahoo.com>
• [modeller_usage] Tutorial, Advanced example 2009/11/02
  • From: Marco <m77it AT yahoo.it>
• [modeller_usage] (no subject) 2009/11/02
  • From: Steve Seibold <seibold AT chemistry.msu.edu>
• [modeller_usage] (no subject) 2009/11/02
  • From: Steve Seibold <seibold AT chemistry.msu.edu>
• Re: [modeller_usage] (no subject) 2009/11/02
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] (no subject) 2009/11/02
  • From: madhavi choudary <bunny.bindumadhavi AT gmail.com>
• [modeller_usage] Disulfide 2009/11/03
  • From: Joel Tyndall <joel.tyndall AT otago.ac.nz>
• Re: [modeller_usage] (no subject) 2009/11/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Basic tutorial 2009/11/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modeling ligands in the binding site 2009/11/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Tutorial, Advanced example 2009/11/03
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Disulfide 2009/11/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Including a Thioester linkage 2009/11/04
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/04
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/04
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] Selection criteria for building sequence database - pdball.pir 2009/11/05
  • From: Praveen Raj <pravee1216 AT gmail.com>
• Re: [modeller_usage] Selection criteria for building sequence database - pdball.pir 2009/11/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/05
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/05
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] More than one Proline in helix! 2009/11/09
  • From: Raghu Bhagavat <bioraghu.iisc AT gmail.com>
• [modeller_usage] Alignment 2009/11/09
  • From: "SHANG Yuan" <spl AT ust.hk>
• Re: [modeller_usage] Alignment 2009/11/09
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] loops and disulfide 2009/11/09
  • From: Joel Tyndall <joel.tyndall AT otago.ac.nz>
• Re: [modeller_usage] loops and disulfide 2009/11/09
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] loops and disulfide 2009/11/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] loops and disulfide 2009/11/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] loops and disulfide 2009/11/09
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Including a Thioester linkage 2009/11/09
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] Fwd: More than one Proline in helix! 2009/11/09
  • From: Raghu Bhagavat <bioraghu.iisc AT gmail.com>
• [modeller_usage] ...disulfide and loops 2009/11/09
  • From: Joel Tyndall <joel.tyndall AT otago.ac.nz>
• [modeller_usage] Alignmnet format conversion 2009/11/11
  • From: Raghu Bhagavat <bioraghu.iisc AT gmail.com>
• [modeller_usage] Installation in Ubuntu 2009/11/13
  • From: Dinesh <chintu504 AT gmail.com>
• [modeller_usage] Residue renumbering 2009/11/13
  • From: Liam Browne <liam.browne AT hotmail.co.uk>
• Re: [modeller_usage] Residue renumbering 2009/11/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] rotation!!! 2009/11/13
  • From: Cool Hunk <fascinatingheart2000 AT yahoo.com>
• Re: [modeller_usage] Installation in Ubuntu 2009/11/13
  • From: Robert Campbell <robert.campbell AT queensu.ca>
• Re: [modeller_usage] Installation in Ubuntu 2009/11/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] rotation!!! 2009/11/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] modelling with ligands (FAD FMN and NADP) 2009/11/16
  • From: Yerko Escalona <yescalona AT ug.uchile.cl>
• [modeller_usage] Installation problem? 2009/11/17
  • From: "Steve Seibold" <seibolds AT msu.edu>
• Re: [modeller_usage] Installation problem? 2009/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modelling with ligands (FAD FMN and NADP) 2009/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Installation problem? 2009/11/17
  • From: "Steve Seibold" <seibolds AT msu.edu>
• [modeller_usage] Mutate and refine residue placement 2009/11/18
  • From: "Steve Seibold" <seibolds AT msu.edu>
• Re: [modeller_usage] Mutate and refine residue placement 2009/11/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] how to assign different template for different regions? 2009/11/22
  • From: leuven <leuven AT yeah.net>
• [modeller_usage] Modeling ligands in the binding site 2009/11/22
  • From: Qinghua Liao <fantasticqhl AT yahoo.com>
• Re: [modeller_usage] how to assign different template for different regions? 2009/11/24
  • From: leuven <leuven AT yeah.net>
• Re: [modeller_usage] how to assign different template for different regions? 2009/11/25
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] HIS and HSE 2009/11/25
  • From: Francesco Musiani <francesco.musiani AT unibo.it>
• [modeller_usage] atom clashed 2009/11/27
  • From: leuven <leuven AT yeah.net>
• [modeller_usage] how to enbale mutiple CPU for modeller? 2009/11/28
  • From: leuven <leuven AT yeah.net>
• Re: [modeller_usage] how to enbale mutiple CPU for modeller? 2009/11/28
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] atom clashed 2009/11/28
  • From: leuven <leuven AT yeah.net>
• [modeller_usage] disulfide building problem 2009/12/06
  • From: leuven <leuven AT yeah.net>
• [modeller_usage] update 2009/12/06
  • From: leuven <leuven AT yeah.net>
• Re: [modeller_usage] disulfide building problem 2009/12/06
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] disulfide building problem 2009/12/06
  • From: João Rodrigues <anaryin AT gmail.com>
• Re: [modeller_usage] update 2009/12/06
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] Fw: Re: update 2009/12/06
  • From: leuven <leuven AT yeah.net>
• [modeller_usage] Modeller on PPC64 with Linux - installation 2009/12/08
  • From: "Wojciech Stach" <wstach AT ualberta.ca>
• Re: [modeller_usage] Modeller on PPC64 with Linux - installation 2009/12/08
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] Virtual conference Inbix '10: Cfp/Registrations starts!! 2009/12/08
  • From: Prash <prash AT bioclues.org>
• Re: [modeller_usage] Modeller on PPC64 with Linux - installation 2009/12/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Chain designation in completing a structure. 2009/12/10
  • From: "Steve Seibold" <seibolds AT msu.edu>
• [modeller_usage] rigid.txt for PDBs with multiple subunits 2009/12/10
  • From: Robin Zhang <robinrzhang AT gmail.com>
• Re: [modeller_usage] Modeling ligands in the binding site 2009/12/10
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] atom clashed 2009/12/10
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] No atoms were read form the specified input pdb file 2009/12/13
  • From: james09 pruza <james09xtal AT gmail.com>
• Re: [modeller_usage] No atoms were read form the specified input pdb file 2009/12/13
  • From: João Rodrigues <anaryin AT gmail.com>
• [modeller_usage] distance restraints multi templates 2009/12/14
  • From: Armin Meier <meier AT lmb.uni-muenchen.de>
• Re: [modeller_usage] distance restraints multi templates 2009/12/14
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] No atoms were read form the specified input pdb file 2009/12/14
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] ab initio modelling with X-ray data 2009/12/15
  • From: leuven <leuven AT yeah.net>
• Re: [modeller_usage] ab initio modelling with X-ray data 2009/12/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Chain designation in completing a structure. 2009/12/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] rigid.txt for PDBs with multiple subunits 2009/12/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] HIS and HSE 2009/12/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] homology modelling vs protein threading 2009/12/19
  • From: Thomas Evangelidis <tevang3 AT gmail.com>
• Re: [modeller_usage] homology modelling vs protein threading 2009/12/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] mailing list 2009/12/21
  • From: 陈颢 <sialic10 AT gmail.com>
• [modeller_usage] Sintax error in script 2009/12/29
  • From: virginia miguel <virgimiguel AT yahoo.com.ar>
• Re: [modeller_usage] Sintax error in script 2009/12/29
  • From: Jonathan Sheehan <jonathan.sheehan AT gmail.com>