Xia,Wei wrote:
> It seems that the hydrogen names in Modeller results are HB1, HB2
> However IUPAC and many other software would use 'HB2 HB3' names.
> Is there any options in Modeller that I can choose or any scripts to use to
> convert the format?
Modeller generates output PDB files that are consistent with
post-remediation PDB structures. If you still have software that expects
pre-remediation PDB format, the easiest solution is probably to write a
short script to convert the atom names in the output PDB files.
Ben Webb, Modeller Caretaker
--
modeller-care@salilab.orghttp://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage